Supplementary Figure 10: Conditional analysis for the FOXC1 locus.

Locus zoom plots for the FOXC1 associated region before (top panel) and after (middle panel) analysis conditional on the top GMDS SNP (rs11969985) (Gharahkhani et al., 2014). The bottom panel shows the effect of conditioning on the top FOXC1 SNP from this study (rs2745572). The OR and P value for the top SNP rs2745572 is OR = 1.254, 95% CI = (1.164, 1.351), P = 2.36 x 10−9 before conditioning and OR = 1.252, 95% CI = (1.159, 1.352), P = 1.03 x 10−8 after conditioning on rs11969985.