Supplementary Figure 3: Global interactions between risk-SNP-containing DHSs and lncRNA promoters as predicted by intercellular functional correlation analysis.
From: Modulation of long noncoding RNAs by risk SNPs underlying genetic predispositions to prostate cancer
Distances between DHSs and lncRNA promoters are restricted to ≤500 kb. Each interaction has a Pearson’s correlation coefficient of 0.7 or greater. All lncRNAs have expression levels of over –2.49 log CPM, the median expression level for lncRNAs, in at least 50% of all prostate adenocarcinoma (PRAD) samples in TCGA. rs7012442 is located at the edge of the DHS and is excluded from the follow-up functional validation.
