Supplementary Figure 4: Phylogenetic tree of all 5,310 M. tuberculosis isolates indicating genotypic drug resistance pattern.

Phylogenetic tree of all 5,310 M. tuberculosis isolates (Online Methods). Colors in the outer circle indicate the genotypic drug resistance pattern of the corresponding strain. In the central radial phylogeny, lineages are labeled and color-coded as follows: pink, lineage 1; blue, lineage 2; purple, lineage 3; red, lineage 4; brown, lineage 5 (M. africanum); dark green, lineage 6 (M. africanum); orange, lineage 7; light green, M. bovis.