Table 3 Performance of algorithms in the sample-classification challenges on the validation cohorta
From: Critical assessment of automated flow cytometry data analysis techniques
| Â | Recall | Precision | Accuracy | F-measure | Recall | Precision | Accuracy | F-measure | Recall | Precision | Accuracy | F-measure |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | Challenge 1: HEUvsUE | Challenge 2: AML | Challenge 3: HVTN | |||||||||
FlowCAP | ||||||||||||
2DhistsSVMb | 0.50 | 0.091 | 0.50 | 0.15 | 0.00 | 0.95 | 0.99 | 0.97 | Â | Â | Â | Â |
EMMIXCYTOM | Â | Â | Â | Â | 0.95 | 0.95 | 0.99 | 0.95 | Â | Â | Â | Â |
flowBin | 0.012 | 0.00 | 0.45 | 0.00 | 0.10 | 0.30 | 0.92 | 0.46 | Â | Â | Â | Â |
flowCore-flowStats | 0.56 | 0.455 | 0.55 | 0.50 | Â | Â | Â | Â | 1.00 | 1.00 | 1.00 | 1.00 |
flowPeakssvm | Â | Â | Â | Â | 1.00 | 1.00 | 1.00 | 1.00 | Â | Â | Â | Â |
flowType | 0.58 | 0.636 | 0.59 | 0.61 | 0.95 | 0.95 | 0.99 | 0.95 | 0.88 | 0.71 | 0.81 | 0.79 |
flowType-FeaLect | 0.55 | 0.545 | 0.55 | 0.55 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 |
Kmeanssvm | Â | Â | Â | Â | Â | Â | Â | Â | 1.00 | 1.00 | 1.00 | 1.00 |
PBSC | 0.33 | 0.273 | 0.36 | 0.30 | 0.75 | 0.75 | 0.94 | 0.75 | 0.95 | 0.95 | 0.95 | 0.95 |
PRAMS | Â | Â | Â | Â | Â | Â | Â | Â | 1.00 | 1.00 | 1.00 | 1.00 |
Pram Spheres | 0.36 | 0.364 | 0.36 | 0.36 | Â | Â | Â | Â | 0.90 | 0.90 | 0.90 | 0.90 |
Random Spheres | Â | Â | Â | Â | 0.95 | 0.95 | 0.99 | 0.95 | Â | Â | Â | Â |
SPADE | Â | Â | Â | Â | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 | 1.00 |
SWIFT | 0.67 | 0.545 | 0.64 | 0.60 | Â | Â | Â | Â | 1.00 | 1.00 | 1.00 | 1.00 |
DREAM | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
admire-lvq | Â | Â | Â | Â | 1.00 | 1.00 | 1.00 | 1.00 | Â | Â | Â | Â |
bcb | Â | Â | Â | Â | 1.00 | 1.00 | 1.00 | 1.00 | Â | Â | Â | Â |
biolobe | Â | Â | Â | Â | 1.00 | 1.00 | 1.00 | 1.00 | Â | Â | Â | Â |
cihc | Â | Â | Â | Â | 1.00 | 0.95 | 0.99 | 0.97 | Â | Â | Â | Â |
daltons | Â | Â | Â | Â | 1.00 | 1.00 | 1.00 | 1.00 | Â | Â | Â | Â |
DREAM–A |  |  |  |  | 0.95 | 0.95 | 0.99 | 0.95 |  |  |  |  |
DREAM–B |  |  |  |  | 1.00 | 0.85 | 0.98 | 0.92 |  |  |  |  |
DREAM–C |  |  |  |  | 1.00 | 0.85 | 0.98 | 0.92 |  |  |  |  |
DREAM–D |  |  |  |  | 0.95 | 0.95 | 0.99 | 0.95 |  |  |  |  |
fivebyfive | Â | Â | Â | Â | 0.95 | 1.00 | 0.99 | 0.98 | Â | Â | Â | Â |
jkjg | Â | Â | Â | Â | 1.00 | 1.00 | 1.00 | 1.00 | Â | Â | Â | Â |
SPCA+GLM | Â | Â | Â | Â | 0.89 | 0.85 | 0.97 | 0.87 | Â | Â | Â | Â |
team21 | Â | Â | Â | Â | 1.00 | 1.00 | 1.00 | 1.00 | Â | Â | Â | Â |
uqs | Â | Â | Â | Â | 1.00 | 0.95 | 0.99 | 0.97 | Â | Â | Â | Â |
