Supplementary Figure 8: Association of TREs in each class to independent functional marks.
From: Identification of active transcriptional regulatory elements from GRO-seq data
(a,b) Comparison of read-densities for H3K9ac (a) and H3K4me3 (b) in each class of functional element. (c) The fraction of ENCODE peak calls for the specified mark (H3K4me1, H3K27ac, H3K9ac, and CTCF) in each of the four classes. The ‘other’ category denotes peaks for the indicated mark falling outside of the putative TREs identified by other assays. (d) Plots show the ENCODE MNase-seq signal centered on the indicated class of TRE.
