Supplementary Figure 1: GenomeSpace allows the biologist user to conduct complex analysis.
From: Integrative genomic analysis by interoperation of bioinformatics tools in GenomeSpace
1a. Flow chart of our analytic approach to dissecting a stem cell-like gene regulatory network in human cancers. Rectangles indicate necessary input data. Rounded rectangles indicate the overall goal achieved by the analysis, grouped into specific analysis steps from the Supplementary Note 1 (brown text). Each group of analysis steps investigates a specific biological question (on the left). See Supplementary Figure 2 for definitions of some terms used in this example analysis. 1b. Detailed steps and tools involved in the integrative genomics analysis scenario for the driving biological project performed using GenomeSpace are numbered in order of execution, and correspond to the numbered steps in the Supplementary Note 1.
