Supplementary Figure 7: Effect of number of GC models
From: Salmon provides fast and bias-aware quantification of transcript expression
The effect of the number of conditional GC models used to account for correlation between fragment GC and sequence-specific bias. We choose the default to be 3 bins; the simplest model that demonstrates the majority of the benefit. Panels a, b and c show the result of varying the number of conditional GC models on an analysis of the GEUVADIS data for all genes, all transcripts, and genes with only two transcripts, respectively.
