Table 1 Data sets in IDR

From: Image Data Resource: a bioimage data integration and publication platform

Study identifier

Species

Type

Screens or experiments

5D images

Size (TB)

Pheno- typesa

Targetsb

Experimentsc

Reference

idr0001-graml-sysgro

S. pombe

Gene deletion screen

1

109,728

10.06

19

3,005

18,432

5

idr0002-heriche-condensation

Human

RNAi screen

1

1,152

2.10

2

102

1,152

26

idr0003-breker-plasticity

Saccharomyces cerevisiae

Protein screen

1

97,920

0.20

14

6,234

32,640

41

idr0004-thorpe-rad52

S. cerevisiae

Gene deletion screen

1

3,765

0.17

1

4,195

4,512

42

idr0005-toret-adhesion

Drosophila melanogaster

RNAi screen

2

45,792

0.14

1

13,035

15,264

43

idr0006-fong-nuclearbodies

Human

Protein localization screen

1

240,848

1.40

8

12,743

16,224

44

idr0007-srikumar-sumo

S. cerevisiae

Protein localization screen

1

3,456

0.02

23

377

1,152

45

idr0008-rohn-actinome

D. melanogaster, human

RNAi screen

2

55,944

0.12

46

12,826

26,496

40

idr0009-simpson-secretion

Human

RNAi screen

2

397,056

3.25

3

17,960

397,056

27

idr0010-doil-dnadamage

Human

RNAi screen

1

56,832

0.08

2

18,675

56,832

46

idr0011-ledesmafernandez-dad4

S. cerevisiae

Gene deletion screen

5

8,957

0.4

1

5,209

8,736

NA

idr0012-fuchs-cellmorph

Human

RNAi screen

1

45,692

0.38

18

16,701

26,112

39

idr0013-neumann-mitocheck

Human

RNAi screen

2

200,995

14.54

18

18,393

206,592

4

idr0015-UNKNOWN-taraoceans

Multi-species

Geographic screen

1

32,776

2.49

0

84

84

47

idr0016-wawer- bioactivecompoundprofiling

Human

Small molecule screen

1

869,820

3.19

2

29,542

144,000

48

idr0017-breinig-drugscreen

Human

Small molecule screen

1

147,456

2.48

0

1,281

36,864

49

idr0018-neff-histopathology

Mus musculus

Histopathology of gene knockouts

1

899

0.27

48

9

248

—

idr0019-sero-nfkappab

Human

HCS image analysis

1

25,872

0.03

0

198

2,156

50

idr0020-barr-chtog

Human

RNAi screen

1

36,960

0.03

2

241

1,232

51

idr0021-lawo- pericentriolarmaterial

Human

Protein localization using 3D-SIM

1

414

0.0003

1

9

414

52

idr0023-szymborska- nuclearpore

Human

Protein localization using dSTORM

1

524

0.0005

1

7

359

53

idr0027-dickerson- chromatin

S. cerevisiae

3D-tracking of tagged chromatin loci

1

229

0.03

0

8

112

54

idr0028-pascualvargas-rhogtpases

Human

RNAi screen

4

155,332

0.18

9

170

5,544

55

idr0032-yang-meristem

Arabidopsis thaliana

In situ hybridization

1

458

0.003

5

115

115

56

Sum

  

35

2,538,777

42

224

161,119

1,002,328

 

Average

   

105,782

1.73

9

6,713

41,764

 
  1. aThe number of submitted phenotypes.
  2. bThe number of genes, compounds or proteins identified as targets for analysis.
  3. cThe number of individual wells (in HCS studies) or imaging experiments (in nonscreen data sets). NA, not applicable (unpublished data).
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