Supplementary Figure 5: Decoy accumulation across multiple runs (5% FDR).

The number of cumulatively detected peak group decoys (a), peptide decoys (b) and protein decoys (c) is shown for 229 DIA runs of the SWATH-MS interlaboratory study data set.

The number of cumulatively detected peak group decoys (a), peptide decoys (b) and protein decoys (c) is shown for 229 DIA runs of the SWATH-MS interlaboratory study data set.