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Robust target labeling from small amounts of RNA for Illumina® Expression BeadChip® arrays

Abstract

The Illumina® Expression BeadChip® arrays are the preferred system for array-based gene expression studies because of their low input requirement, high sensitivity, low cost and high throughput. Two target labeling procedures—the TargetAmp-Nano and TargetAmp-Pico Target Labeling Kits for Illumina Expression BeadChip arrays—generate microgram amounts of biotin-antisense RNA (aRNA) from nanogram and picogram amounts of RNA, respectively, and yield high-quality expression analysis results.

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Figure 1: Genes detected using labeled target prepared by the TargetAmp-Nano and TargetAmp-Pico kits.
Figure 2: Correlation of expression ratios.

References

  1. Van Gelder, R.N. et al. Amplified RNA synthesis from limited quantities of heterogeneous cDNA. Proc. Natl. Acad. Sci. USA 87, 1663–1667 (1990).

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Acknowledgements

We thank A. Khanna and A. Radek (Epicentre) and I. Lewis and B. Applegate (Illumina, Inc., San Diego, California, USA) for providing data used in this application note.

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Correspondence to Jim Pease.

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This article was submitted to Nature Methods by a commercial organization and has not been peer reviewed. Nature Methods takes no responsibility for the accuracy or otherwise of the information provided.

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Pease, J. Robust target labeling from small amounts of RNA for Illumina® Expression BeadChip® arrays. Nat Methods 8, i–ii (2011). https://doi.org/10.1038/nmeth.f.346

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