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New checksum functions for Biopython
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  • Published: 28 June 2007

New checksum functions for Biopython

  • Sebastian Bassi1 &
  • Virginia Gonzalez1 

Nature Precedings (2007)Cite this article

  • 573 Accesses

  • 2 Citations

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Abstract

Checksum algorithms are used in biological databases for integrity check and identification purposes. CRC64 is the only checksum algorithm already included in Biopython. This work proposes two new implementation of known algorithms (GCG Checksum and SEGUID). There is also an application based on SEGUID: Looking for redundancy between two FASTA files full of protein sequences based only in sequence information, by comparing the SEGUIDs of both files.The code is shown in the manuscript and may be available at Biopython.org.

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Authors and Affiliations

  1. Universidad Nacional de Quilmes https://www.nature.com/nature

    Sebastian Bassi & Virginia Gonzalez

Authors
  1. Sebastian Bassi
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  2. Virginia Gonzalez
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Corresponding author

Correspondence to Sebastian Bassi.

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Cite this article

Bassi, S., Gonzalez, V. New checksum functions for Biopython. Nat Prec (2007). https://doi.org/10.1038/npre.2007.278.1

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  • Received: 28 June 2007

  • Accepted: 28 June 2007

  • Published: 28 June 2007

  • DOI: https://doi.org/10.1038/npre.2007.278.1

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Keywords

  • biopython
  • crc
  • checksum
  • SEGUID
  • fasta
  • algorithm
  • sequence
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