Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

Advertisement

Nature Precedings
  • View all journals
  • Search
  • My Account Login
  • Content Explore content
  • About the journal
  • RSS feed
  1. nature
  2. nature precedings
  3. articles
  4. article
Structural and functional glycosphingolipidomics by glycoblotting with aminooxy-functionalized gold nanoparticle
Download PDF
Download PDF
  • Manuscript
  • Open access
  • Published: 08 July 2008

Structural and functional glycosphingolipidomics by glycoblotting with aminooxy-functionalized gold nanoparticle

  • Noriko Nagahori1,
  • Midori Abe2 &
  • Shin-Ichiro Nishimura3 

Nature Precedings (2008)Cite this article

  • 321 Accesses

  • Metrics details

Abstract

Glycosphingolipids (GSLs) synthesized in Golgi apparatus by sequential transfer of sugar residues to a ceramide lipid anchor are ubiquitously distributing on vertebrate plasma membranes. Standardized method allowing for high throughput structural profiling and functional characterization of living cell surface GSLs is of growing importance because they function as crucial signal transduction molecules in various processes of dynamic cellular recognitions. However, methods are not available for amplification of GSLs, while the genomic scale PCR amplification permits large-scale mammalian proteomic analysis.&x3000;Here we communicate such an approach to a novel "omics", namely glycosphingolipidomics based on the glycoblotting method. The method, which involves selective ozonolysis of the C-C double bond in ceramide moiety and subsequent enrichment of generated GSL-aldehydes by chemical ligation using aminooxy-functionalized gold nanoparticle (aoGNP) should be of widespread utility for identifying and characterizing whole GSLs present in the living cell surfaces. The present protocol using glycoblotting permitted MALDI-TOFMS-based high throughput structural profiling of mouse brain gangliosides such as GM1, GD1a/GD1b, and GT1b for adult or GD3 in case for embryonic mouse. When mouse melanoma B16 cells were subjected to this protocol, it was demonstrated that gangliosides enriched from the plasma membranes are only GM3 bearing microheteogeneity in the structure of N-acyl chain. Surface plasmon resonance analysis revealed that aoGNP displaying whole GSLs blotted from mouse B16 melanoma cell surfaces can be used directly for monitoring specific interaction with self-assembled monolayer (SAM) of Gg3Cer (gangliotriaosylceramide). Our results indicate that GSL-selective enrichment onto aoGNP from living cell surfaces allows for rapid reconstruction of plasma membrane models mimicking intact GSL-microdomain feasible for further structural and functional characterization.

Similar content being viewed by others

Illuminating the dark space of neutral glycosphingolipidome by selective enrichment and profiling at multi-structural levels

Article Open access 04 July 2024

Comprehensive analysis of glycosphingolipid glycans by lectin microarrays and MALDI-TOF mass spectrometry

Article 07 June 2021

Ceramide structure dictates glycosphingolipid nanodomain assembly and function

Article Open access 16 June 2021

Article PDF

Author information

Authors and Affiliations

  1. Hokkaido University, Biological Sciences https://www.nature.com/nature

    Noriko Nagahori

  2. Hokkaido University https://www.nature.com/nature

    Midori Abe

  3. Hokkaido University, Advanced Life Science https://www.nature.com/nature

    Shin-Ichiro Nishimura

Authors
  1. Noriko Nagahori
    View author publications

    Search author on:PubMed Google Scholar

  2. Midori Abe
    View author publications

    Search author on:PubMed Google Scholar

  3. Shin-Ichiro Nishimura
    View author publications

    Search author on:PubMed Google Scholar

Corresponding author

Correspondence to Shin-Ichiro Nishimura.

Rights and permissions

Creative Commons Attribution 3.0 License.

Reprints and permissions

About this article

Cite this article

Nagahori, N., Abe, M. & Nishimura, SI. Structural and functional glycosphingolipidomics by glycoblotting with aminooxy-functionalized gold nanoparticle. Nat Prec (2008). https://doi.org/10.1038/npre.2008.2034.1

Download citation

  • Received: 03 July 2008

  • Accepted: 08 July 2008

  • Published: 08 July 2008

  • DOI: https://doi.org/10.1038/npre.2008.2034.1

Share this article

Anyone you share the following link with will be able to read this content:

Sorry, a shareable link is not currently available for this article.

Provided by the Springer Nature SharedIt content-sharing initiative

Keywords

  • GSLsGNPs
Download PDF

Advertisement

Explore content

  • Research articles
  • News & Comment
  • Sign up for alerts
  • RSS feed

About the journal

  • Journal Information

Search

Advanced search

Quick links

  • Explore articles by subject
  • Find a job
  • Guide to authors
  • Editorial policies

Nature Precedings (Nat Preced)

nature.com sitemap

About Nature Portfolio

  • About us
  • Press releases
  • Press office
  • Contact us

Discover content

  • Journals A-Z
  • Articles by subject
  • protocols.io
  • Nature Index

Publishing policies

  • Nature portfolio policies
  • Open access

Author & Researcher services

  • Reprints & permissions
  • Research data
  • Language editing
  • Scientific editing
  • Nature Masterclasses
  • Research Solutions

Libraries & institutions

  • Librarian service & tools
  • Librarian portal
  • Open research
  • Recommend to library

Advertising & partnerships

  • Advertising
  • Partnerships & Services
  • Media kits
  • Branded content

Professional development

  • Nature Awards
  • Nature Careers
  • Nature Conferences

Regional websites

  • Nature Africa
  • Nature China
  • Nature India
  • Nature Japan
  • Nature Middle East
  • Privacy Policy
  • Use of cookies
  • Legal notice
  • Accessibility statement
  • Terms & Conditions
  • Your US state privacy rights
Springer Nature

© 2025 Springer Nature Limited

Nature Briefing

Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing