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Developing ontologies in decentralised settings
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  • Published: 08 May 2009

Developing ontologies in decentralised settings

  • Alexander Garcia1,
  • Kieran O’Neill2,
  • Leyla Garcia3,
  • Phillip Lord4,
  • Robert Stevens5,
  • Oscar Corcho6 &
  • …
  • Frank Gibson7 

Nature Precedings (2009)Cite this article

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Abstract

This paper addresses two research questions: “How should a well-engineered methodology facilitate the development of ontologies within communities of practice?” and “What methodology should be used?” If ontologies are to be developed by communities then the ontology development life cycle should be better understood within this context. This paper presents the Melting Point (MP), a proposed new methodology for developing ontologies within decentralized settings. It describes how MP was developed by taking best practices from other methodologies, provides details on recommended steps and recommended processes, and compares MP with alternatives. The methodology presented here is the product of direct first-hand experience and observation of biological communities of practice in which some of the authors have been involved. The Melting Point is a methodology engineered for decentralised communities of practice for which the designers of technology and the users may be the same group. As such, MP provides a potential foundation for the establishment of standard practices for ontology engineering.

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Authors and Affiliations

  1. University of Bremen, Bremen, Germany

    Alexander Garcia

  2. Terry Fox Laboratory, Vancouver, Canada

    Kieran O’Neill

  3. E-Business and Web Science Research Group, Bundeswehr University, Munich https://www.nature.com/nature

    Leyla Garcia

  4. School of Computing Science, Newcastle University, Newcastle upon Tyne, UK

    Phillip Lord

  5. Department of Computer Science University of Manchester Kilburn Building Oxford Road Manchester M13 9PL, UK

    Robert Stevens

  6. Ontology Engineering Group. Departamento de Inteligencia Artificial, Facultad de Informtica, Universidad Politcnica de Madrid, Spain

    Oscar Corcho

  7. Abcam plc, Cambridge Science Park, Cambridge, UK

    Frank Gibson

Authors
  1. Alexander Garcia
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  2. Kieran O’Neill
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  3. Leyla Garcia
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  4. Phillip Lord
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  5. Robert Stevens
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  6. Oscar Corcho
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  7. Frank Gibson
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Corresponding authors

Correspondence to Alexander Garcia or Frank Gibson.

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Cite this article

Garcia, A., O’Neill, K., Garcia, L. et al. Developing ontologies in decentralised settings. Nat Prec (2009). https://doi.org/10.1038/npre.2009.3231.1

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  • Received: 08 May 2009

  • Accepted: 08 May 2009

  • Published: 08 May 2009

  • DOI: https://doi.org/10.1038/npre.2009.3231.1

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Keywords

  • ontology
  • community
  • OBI
  • ontology engineering
  • community curation
  • knowledge review
  • Methodology
  • biocuration
  • ontologies

This article is cited by

  • A document-centric approach for developing the tolAPC ontology

    • Aisha Blfgeh
    • Jennifer Warrender
    • Phillip Lord

    Journal of Biomedical Semantics (2017)

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