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MIREOT: the Minimum Information to Reference an External Ontology Term
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  • Open access
  • Published: 10 August 2009

International Conference on Biomedical Ontology

MIREOT: the Minimum Information to Reference an External Ontology Term

  • Mélanie Courtot1,
  • Frank Gibson2,
  • Allyson Lister3,
  • James Malone4,
  • Daniel Schober5,
  • Ryan Brinkman1 &
  • …
  • Alan Ruttenberg6 

Nature Precedings (2009)Cite this article

  • 1545 Accesses

  • 41 Citations

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Abstract

While the Web Ontology Language (OWL) provides a mechanism to import ontologies, this mechanism is not always suitable. First, given the current state of editing tools and the issues they have working with large ontologies, direct OWL imports have sometimes proven impractical for day-to-day development. Second, ontologies chosen for integration may be under active development and not aligned with the chosen design principles. Importing heterogeneous ontologies in their entirety may lead to inconsistencies or unintended inferences. In this paper we propose a set of guidelines for importing required terms from an external resource into a target ontology. We describe the guidelines, their implementation, present some examples of application, and outline future work and extensions.

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Author information

Authors and Affiliations

  1. TFL-BCCRC https://www.nature.com/nature

    Mélanie Courtot & Ryan Brinkman

  2. Abcam PLC, Cambridge, UK

    Frank Gibson

  3. CISBAN and School of Computing Science, Newcastle University, Newcastle upon Tyne, UK

    Allyson Lister

  4. The European Bioinformatics Institute, Cambridge, UK

    James Malone

  5. The European Bioinformatics Institute, Cambridge, UK and Institute of Medical Biometry and Medical Informatics (IMBI), University Medical Center, Freiburg, Germany

    Daniel Schober

  6. Science Commons, Cambridge, MA, USA

    Alan Ruttenberg

Authors
  1. Mélanie Courtot
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  2. Frank Gibson
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  3. Allyson Lister
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  4. James Malone
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  5. Daniel Schober
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  6. Ryan Brinkman
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  7. Alan Ruttenberg
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Corresponding author

Correspondence to Mélanie Courtot.

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Courtot, M., Gibson, F., Lister, A. et al. MIREOT: the Minimum Information to Reference an External Ontology Term. Nat Prec (2009). https://doi.org/10.1038/npre.2009.3576.1

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  • Received: 07 August 2009

  • Accepted: 10 August 2009

  • Published: 10 August 2009

  • DOI: https://doi.org/10.1038/npre.2009.3576.1

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Keywords

  • OBI
  • OBO Foundry
  • integration
  • Web Ontology Language
  • OWL
  • ontology
  • ontologies
  • MIREOT
  • Minimum Information to Reference an External Ontology Term
  • guidelines

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    BMC Bioinformatics (2022)

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