Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Letter
  • Published:

The burst phase in ribonuclease A folding and solvent dependence of the unfolded state

Abstract

Submillisecond burst phase signals measured in kinetic protein folding experiments have been widely interpreted in terms of the fast formation of productive folding intermediates. Experimental comparisons with non-folding polypeptide chains show that, for ribonuclease A and cytochrome c , these signals in fact reflect a shift from one biased ensemble of the unfolded state to another as a function of change in denaturant concentration.

This is a preview of subscription content, access via your institution

Access options

Buy this article

USD 39.95

Prices may be subject to local taxes which are calculated during checkout

Figure 1: Melting behavior of native RNase A (closed circles) and the disulfide-broken polypeptide (open triangles).
Figure 2: Kinetic traces of refolding by stopped-flow CD.
Figure 3: Dependence of kinetic amplitudes on final GmCl concentration.

Similar content being viewed by others

References

  1. Roder, H. & Colon, W. Curr. Opin. Struct. Biol. 7, 15–28 (1997).

    Article  CAS  Google Scholar 

  2. Sosnick, T.R., Mayne, L. & Englander, S.W. Proteins: 24, 413– 426 (1996).

    Article  CAS  Google Scholar 

  3. Sosnick, T.R., Shtilerman, M.D., Mayne, L. & Englander, S.W. Proc. Natl. Acad. Sci. USA 94, 8545– 8550 (1997).

    Article  CAS  Google Scholar 

  4. Chan, C.K. et al.Proc. Natl. Acad. Sci. USA 94, 1779– 1784 (1997).

    Article  CAS  Google Scholar 

  5. Houry, W.A. & Scheraga, H.A. Biochemistry 35, 11734–11746 (1996).

    Article  CAS  Google Scholar 

  6. Harrington, W.F. & Schellman, J.A. C. R. Trav. Lab Carlsberg Ser. Chim. 30, 21 ( 1956).

    CAS  Google Scholar 

  7. Bai, Y., Milne, J.S., Mayne, L. & Englander, S.W. Proteins 17, 75–86 (1993).

    Article  CAS  Google Scholar 

  8. Privalov, P.L. et al. J. Mol. Biol. 205, 737– 750 (1989).

    Article  CAS  Google Scholar 

  9. Dill, K.A. & Shortle, D. Annu. Rev. Biochem. 60, 795–825 (1991).

    Article  CAS  Google Scholar 

  10. Krimm, S. & Tiffany, M.L. Israel J. Chem. 12 , 189–200 (1974).

    Article  CAS  Google Scholar 

  11. Nozaki, Y. & Tanford, C. J. Biol. Chem. 245, 1648–1652 (1970).

    CAS  PubMed  Google Scholar 

  12. Houry, W.A., Rothwarf, D.M. & Scheraga, H.A. Biochemistry 35, 10125– 10133 (1996).

    Article  CAS  Google Scholar 

  13. Houry, W.A., Rothwarf, D.M. & Scheraga, H.A. Biochemistry 33, 2516– 2530 (1994).

    Article  CAS  Google Scholar 

  14. Sauder, J. M. & Roder, H. Folding & Design 3 , 293–301 (1998).

    Article  CAS  Google Scholar 

  15. Shastry, M.C.R. & Roder, H. Nature Struct. Biol. 5, 385–392 ( 1998).

    Article  CAS  Google Scholar 

  16. Jennings, P.A. & Wright, P.E. Science 262, 892–896 (1993).

    Article  CAS  Google Scholar 

  17. Raschke, T.M. & Marqusee, S. Nature Struct. Biol. 4, 298–304 (1997).

    Article  CAS  Google Scholar 

  18. Gladwin, S.T. & Evans, P.A. Folding & Design 1, 407–417 (1996).

    Article  CAS  Google Scholar 

  19. Khorasanizadeh, S., Peters, I.D. & Roder, H. Nature Struct. Biol. 3, 193– 205 (1996).

    Article  CAS  Google Scholar 

  20. Hosszu, L.L. et al. Nature Struct. Biol. 4, 801– 804 (1997).

    Article  CAS  Google Scholar 

  21. Parker, M.J., Dempsey, C.E., Lorch, M. & Clarke, A.R. Biochemistry 36, 13396–13405 ( 1997).

    Article  CAS  Google Scholar 

  22. Thompson, P.A., Eaton, W.A. & Hofrichter, J. Biochemistry 36, 9200– 9210 (1997).

    Article  CAS  Google Scholar 

  23. Munoz, V., Thompson, P.A., Hofrichter, J. & Eaton, W.A. Nature 390, 196–199 ( 1997).

    Article  CAS  Google Scholar 

  24. Burton, R.E., Huang, G.S., Dougherty, M.A., Fullbright, P.W. & Oas, T.G. J. Mol. Biol. 263, 311–322 (1996).

    Article  CAS  Google Scholar 

  25. Abkevich, V.I., Gutin, A.M. & Shakhnovich, E.I. Biochemistry 33, 10026– 10036 (1994).

    Article  CAS  Google Scholar 

  26. Sosnick, T.R., Mayne, L., Hiller, R. & Englander, S.W. Nature Struct. Biol. 1, 149–156 ( 1994).

    Article  CAS  Google Scholar 

  27. Rothwarf, D.M. & Scheraga, H.A. Biochemistry 32, 2671–2679 ( 1993).

    Article  CAS  Google Scholar 

  28. Johnson, W.C. Annu. Rev. Biophys. Biophys. Chem. 17, 145– 166 (1988).

    Article  CAS  Google Scholar 

Download references

Acknowledgements

This work was supported by NIH research grants to S.W.E. and T.R.S.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Phoebe X. Qi.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Qi, P., Sosnick, T. & Englander, S. The burst phase in ribonuclease A folding and solvent dependence of the unfolded state . Nat Struct Mol Biol 5, 882–884 (1998). https://doi.org/10.1038/2321

Download citation

  • Received:

  • Accepted:

  • Issue date:

  • DOI: https://doi.org/10.1038/2321

This article is cited by

Search

Quick links

Nature Briefing

Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing