Supplementary Figure 5: Cation binding in PC2 and comparison of the presumed open states to the closed PC2CL.
From: Molecular insights into lipid-assisted Ca2+ regulation of the TRP channel Polycystin-2

(a) Ca2+ (green spheres) and potential other cations (blue spheres) in PC2MI aligned with Ca2+ in CaVAB (yellow spheres, pdb entry code 4MVO) and TRPV6 (magenta, pdb entry code 5IWP). Gray spheres indicate the position of cations in PC2SI. (b) Spatial constraints in the translocation pathway of PC2 states with CaVAB (magenta, pdb entry code 4MVO). Radii along the translocation pathway of PC2MI (green) and PC2SI (blue) were calculated using the script HOLE. Residues forming narrow constrictions are indicated. Structural difference between PC2MI, PC2SI and the closed state PC2CL (Grieben et al., 2016): c) PC2MI and d) PC2SI are shown as worm models; colors and channel diameters indicate Cα r.m.s.d. relative to PC2CL (blue 0 Å, white 1.5 Å and red >3 Å, larger diameter stands for larger deviation; Cα of PC2CL is shown as black wire).