Table 3 Primers used in this study

From: Overexpression of ribosomal RNA in prostate cancer is common but not linked to rDNA promoter hypomethylation

Primer

Position

Sequence

Product Size (bp)

45S rRNA forward

851–868

5′-GAACGGTGGTGTGTCGTT-3′

130

45S rRNA reverse

961–980

5′-GCGTCTCGTCTCGTCTCACT-3′

 

28S rRNA forward

8352–8371

5′-AGAGGTAAACGGGTGGGGTC-3′

113

28S rRNA reverse

8448–8464

5′-GGGGTCGGGAGGAACGG-3′

 

18S rRNA forward

4026–4043

5′-GATGGTAGTCGCCGTGCC-3′

110

18S rRNA reverse

4119–4135

5′-GCCTGCTGCCTTCCTTGG-3′

 

5.8S rRNA forward

6642–6657

5′-ACTCGGCTCGTGCGTC-3′

136

5.8S rRNA reverse

6762–6777

5′-GCGACGCTCAGACAGG-3′

 

TBP forward

 

5′-CACGAACCACGGCACTGATT-3′

89

TBP reverse

 

5′-TTTTCTTGCTGCCAGTCTGGAC-3′

 

rDNA genotyping forward

 

5′-GTGTGTCCCGGTCGTAGG-3′

420

rDNA genotyping reverse

 

5′-GTCACCGTGAGGCCAGAG-3′

 

rDNA promoter bisulfite sequence foward

 

5′-GTTTTTGGGTTGATTAGA-3′

229

rDNA promoter bisulfite sequence reverse

 

5′-AAAACCCAACCTCTCC-3′

 

rDNA promoter RTMSP forward

 

5′-GGGGTTGATTAGAGGGTTTC-3′

189

rDNA promoter RTMSP reverse

 

5′-CAACGTATCAACAATAACCCG A-3′

 

MYOD1 RTMSP forward

 

5′-CCAACTCCAAATCCCCTCTCTAT-3′

162

MYOD1 RTMSP reverse

 

5′-TGATTAATTTAGATTGGGTTTAGAGAAGGA-3′

 

mMYC forward

 

5′-CAGATCAGCAACAACCGAAA-3′

168

mMYC reverse

 

5′-GGCCTTTTCATTGTTTTCCA-3′

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