Table 3 WHV–woodchuck genome junctions identified in liver biopsies after de novo infection

Animal/ liver biopsy number	Total of virus–host junctions detected (no)	WHV sequence (nt. position)	Host sequence (bp length)	Chromosome number ^a	Sequence locus ^a	Host sequence (nt. position)	Gene ^a	Total of virus–virus junctions detected (no)
Cw1/M LBx2-1 h.p.i.	3	PS3200–3256	33	11	q21	95720503–95720470	MAML2	3
		X1853–1876	16	UI	UI	UI	UI
		PS2785–2934	36	15	q25	84783482–84783518	EFTUD1P1
Cw2/F LBx2-1 h.p.i.	5	X1913–1853	48	2	p14	69870009–69870057	AAK1	12
		X1913–1853	118	2	p14	69784039–69784157	AAK1
		X1913–1853	19	6	q14.1	83777393–8377412	KIAA1117
		X1910–1853	20	20	q12	39989149–39989169	LPIN3
		PS3030–3009	17	20	q13.2	178193731–178193748	PHACTR3
Cw4/M LBx2–3 h.p.i.	3	PS3250–3308	75	UI	UI	UI	UI	4
		PS3251–3308	68	UI	UI	UI	UI
		PS3251–3308	70	UI	UI	UI	UI
Cw1/M LBx3–6 w.p.i.	2	X1855–1876	16	UI	UI	UI	UI	0
		X1854–1877	18	16^b	q13^b	2650–2632	NLRC5^b	0
Cw2/F LBx3–6 w.p.i.	2	X1623–1501	210	UI	UI	UI	UI	0
		X1548–1501	137	UI	UI	UI	UI
Cw3/F Bx3–6 w.p.i.	1	X1772–1821	81	UI	UI	UI	UI	2
Cw4/M LBx3–6 w.p.i.	2	PS3250–3308	68	UI	UI	UI	UI	4
		X1651–1810	26	X	p21.1	18674290–18674316	HDAC-9

Abbreviations: AAK1, AP-1 associated kinase; EFTUD1P1, elongation factor Tu GTP binding domain containing 1 pseudogene; HDAC-9, histone deacetylase-9; Kazusa cDNA 1117; KIAA1117; LPIN3, lipin-3; MAML2, mastermind-like 2; NLRC5, NLR family CARD domain containing 5; PHACTR3, phosphatase and actin regulator 3; UI, unidentified sequence.
^aBased on homology with human genome.
^bBased on homology with mouse genome.

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