Abstract
Conformational analyses for polypeptides having ionizable side chains were carried out by varying side-chain length. The entropy of the chain in the random-coil state was evaluated from the calculated conformational energy. For such acidic polypeptides as poly(L-aspartic acid) and poly(L-glutamic acid), the helix conformation in an ionized state is more stable than in an un-ionized state. On the other hand, with basic polypeptides having long side chains, such as poly(L-lysine), the helix conformation is destabilized by ionization of the side chains. These theoretical results successfully interpret results obtained experimentally on the pH-induced transition of polypeptides.
Similar content being viewed by others
Log in or create a free account to read this content
Gain free access to this article, as well as selected content from this journal and more on nature.com
or
References
P. Doty, A. Wada, J. T. Yang, and E. R. Blout, J. Polym. Sci., 23, 851 (1957).
P. Doty, K. Imahori, and E. Klemperer, Proc. Natl. Acad. Sci., 44, 424 (1958).
A. Wada, Mol. Phys., 3, 409 (1960).
J. Applequist and P. Doty, in "Polyamino Acids, Polypeptide and Protein," M. A. Stahmann, Ed., University of Wisconsine Press, Medison, Wise. 1962, p 161.
Y. P. Myer, Macromolecules, 2, 624 (1969).
M. L. Tiffany and S. Krimm, Biopolymers, 6, 1379 (1968).
A. Ciferri, D. Puett, L. Rajagh and J. Hermans, Jr., Biopolymers, 6, 1019 (1968).
B. H. Zimm and S. A. Rice, Mol. Phys., 3, 391 (1960).
S. Krimm and J. E. Mark, Proc. Natl. Acad. Sci., 69, 1122 (1968).
L. Pauling, "The Nature of Chemical Bond," 3rd ed, Cornell University Press, Ithaca, N.Y., 1960.
S. Tanaka and A. Nakajima, Polym. J., 1, 71 (1970).
D. A. Brant, W. G. Miller, and P. J. Flory, J. Mol. Biol., 23, 47 (1967).
D. A. Brant and P. J. Flory, J. Am. Chem. Soc., 87, 2791 (1965).
R. A. Scott and H. A. Scheraga, J. Chem. Phys., 45, 2091 (1966).
T. Ooi, R. A. Scott, G. Vanderkooi, and H. A. Scheraga, J. Chem. Phys., 46, 4410 (1967).
For example see J. C. Slater and N. H. Frank, "Introduction to Theoretical Physics," McGraw-Hill, New York and London, 1933.
G. Némethy, S. J. Leach, and H. H. Scheraga, Phys. Chem., 70, 988 (1966).
S. J. Leach, G. Némethy, and H. A. Scheraga, Biopolymers, 4, 369 (1966).
C. Ramakrishnan and G. N. Ramachandran, Biophys. J., 5, 909 (1965).
G. N. Ramachandran, C. Ramakrishnan, and J. V. Sasisekharan, J. Mol. Biol., 7, 95 (1963).
S. Lifson and A. Roig, J. Chem. Phys., 34, 1963 (1961).
T. M. Birshtein and O. B. Ptitsyn, "Conformations of Macromolecules," S. N. Timasheff and M. J. Timasheff, Translators, Interscience Publishers, Inc., New York, N. Y., 1966, Chapter 10.
L. Peller, J. Phys. Chem., 63, 1194 (1959).
Author information
Authors and Affiliations
Rights and permissions
About this article
Cite this article
Tanaka, S., Nakajima, A. Conformational Aspects of Polypeptides Containing lonizable Side Chains. Polym J 1, 505–517 (1970). https://doi.org/10.1295/polymj.1.505
Issue date:
DOI: https://doi.org/10.1295/polymj.1.505


