Abstract
Random-coiled conformations of poly(L-phenylalanine) and poly(L-tyrosine) were theoretically analyzed by a conformational energy calculation based on intra-residue interactions. Favorable side-chain/backbone interactions stabilizing extended conformations were found. Owing to these interactions, the characteristic ratios of poly(L-phenylalanine) and poly(L-tyrosine) were significantly higher than that of poly(L-alanine). The theoretical characteristic ratio of poly(L-tyrosine) was in good agreement with the experimental results for the side-chain derivative of poly(L-tyrosine).
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References
D. A. Brant and P. J. Flory, J. Am. Chem. Soc., 87, 2791 (1965).
D. A. Brant, W. G. Miller, and P. J. Flory, J. Mol. Biol., 23, 47 (1967).
W. G. Miller, D. A. Brant, and P. J. Flory, J. Mol. Biol., 23, 67 (1967).
P. Schimmel and P. J. Flory, Proc. Natl. Acad. Sci. U.S.A., 58, 52 (1967).
P. Schimmel and P. J. Flory, J. Mol. Biol., 34, 105 (1968).
S. Tanaka and A. Nakajima, Polym. J., 1, 71 (1970).
S. Tanaka and A. Nakajima, Polym. J., 2, 111 (1971).
S. Tanaka and A. Nakajima, Polym. J., 2, 725 (1971).
D. A. Brant and P. J. Flory, J. Am. Chem. Soc., 87, 2788 (1965).
H. Fujita, A. Teramoto, T. Yamashita, K. Okita, and S. Ikeda, Biopolymers, 4, 781 (1966).
M. Terbojevich, E. Peggion, A. Cosani, G. D’Este, and E. Scoffone, Eur. Polym. J., 3, 681 (1967).
W. G. Miller and C. V. Goebel, Biochemistry, 7, 3925 (1968).
S. S. Zimmerman, M. S. Pottle, G. Nemethy, and H. A. Scheraga, Macromolecules, 10, 1 (1977).
M. Oka, G. T. Montelione, and H. A. Scheraga, submitted to J. Am. Chem. Soc.
M. Oka and A. Nakajima, to be submitted to Polym. J.
F. A. Momany, R. F. McGuire, A. W. Burgess, and H. A. Scheraga, J. Phys. Chem., 79, 2361 (1975).
IUPAC-IUB Commission on Biological Nomenclature, Biochemistry, 9, 3471 (1970).
P. J. Flory, “Statistical Mechanics of Chain Molecules,” John Wiley & Sons, New York, N.Y., 1969.
M. Oka and A. Nakajima, unpublished data.
E. Benedetti, C. Pedone, C. Toniolo, G. Nemethy, M. S. Pottle, and H. A. Scheraga, Int. J. Peptide Protein Res., 16, 156 (1980).
G. Nemethy, M. S. Pottle and H. A. Scheraga, J. Phys. Chem., 87, 1883 (1983).
V. Sasisekharan, “Collagen,” N. Ramanathan, Ed., John Wiley & Sons, New York, N.Y., 1962, p 39.
J. P. Vollmer and G. Spach, Biopolymers, 5, 337 (1967).
This value was estimated using the experimental results of ref 23 and the universal constant Φ0=2.5×1021, which is the currently most reasonable value as mentioned at page 364 in ref 25. A slightly larger value 13.0 than this was presented in Table IV of ref 26 in which Φ0=2.3×1021 was used to calculate.
H. Yamakawa, “Modern Theory of Polymer Solutions,” Harper & Row, New York, N.Y., 1971.
A. Teramoto and H. Fujita, Adv. Polym. Sci., 18, 65 (1975).
P. Y. Chou and G. Fasman, Adv. Enzym., 47, 45 (1978).
S. S. Zimmerman, L. L. Shipman, and H. A. Scheraga, J. Phys. Chem., 81, 614 (1977).
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Oka, M., Nakajima, A. Random-Coiled Conformation of Polypeptide Chains I. Theoretical Conformational Analysis of Polypeptide Chains with Aromatic Side Chains. Polym J 16, 693–709 (1984). https://doi.org/10.1295/polymj.16.693
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DOI: https://doi.org/10.1295/polymj.16.693
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