Table 1 Tools for modified base detection

From: Recent advances in the detection of base modifications using the Nanopore sequencer

Tool

Target

URL

Nanopolish

DNA

https://nanopolish.readthedocs.io/en/latest/index.html

SignalAlign

DNA

https://github.com/ArtRand/signalAlign

mCaller

DNA

https://github.com/al-mcintyre/mCaller

DeepSignal

DNA

https://github.com/bioinfomaticsCSU/deepsignal

DeepMod

DNA

https://github.com/WGLab/DeepMod

NanoMod

DNA

https://github.com/WGLab/NanoMod

Tombo

DNA/RNA

https://github.com/nanoporetech/tombo

ELIGOS

RNA

https://bitbucket.org/piroonj/eligos.git

EpiNano

RNA

https://github.com/enovoa/EpiNano/issues

Flappy

DNA

https://github.com/nanoporetech/flappie

Taiyaki

DNA

https://github.com/nanoporetech/taiyaki

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