Table 2 Average imputation accuracy for all alleles (n = 5)
From: Efficient HLA imputation from sequential SNPs data by transformer
Dataset | Indices | DEEP*HLA | HLARIMNT | ||
|---|---|---|---|---|---|
Mean | S.D. | Mean | S.D. | ||
Pan-Asian | r2 | 0.884 | 0.024 | 0.922 | 0.015 |
PPV | 0.894 | 0.023 | 0.917 | 0.020 | |
Sensitivity | 0.895 | 0.023 | 0.922 | 0.015 | |
Probability | 0.893 | 0.023 | 0.899 | 0.021 | |
T1DGC | r2 | 0.970 | 0.004 | 0.976 | 0.003 |
PPV | 0.974 | 0.003 | 0.976 | 0.003 | |
Sensitivity | 0.974 | 0.003 | 0.977 | 0.003 | |
Probability | 0.974 | 0.004 | 0.974 | 0.003 | |
Mixed | r2 | 0.919 | 0.004 | 0.935 | 0.003 |
PPV | 0.926 | 0.003 | 0.933 | 0.003 | |
Sensitivity | 0.929 | 0.003 | 0.934 | 0.003 | |
Probability | 0.928 | 0.004 | 0.918 | 0.003 | |
