Table 3 Average imputation accuracy for infrequent (<0.01) alleles (n = 5)
From: Efficient HLA imputation from sequential SNPs data by transformer
Dataset | Indices | DEEP*HLA | HLARIMNT | ||
|---|---|---|---|---|---|
Mean | S.D. | Mean | S.D. | ||
T1DGC | r2 | 0.860 | 0.030 | 0.880 | 0.022 |
PPV | 0.893 | 0.047 | 0.900 | 0.028 | |
Sensitivity | 0.846 | 0.043 | 0.860 | 0.036 | |
Probability | 0.846 | 0.040 | 0.853 | 0.037 | |
