Table 2 List of IBD-associated lncRNAs alongside their 100 kb up- and downstream neighboring protein-coding genes
From: The emerging role of lncRNAs in inflammatory bowel disease
ID | Name | PMID | Protein-coding gene (100 kb) |
|---|---|---|---|
Upregulated in CD and UC | |||
ENSG00000234741 | GAS5 | 28722800 | CENPL, DARS2, KLHL20, RC3H1, SERPINC1, ZBTB37 |
ENSG00000227398 | KIF9-AS1 | 29207070, 25991924 | KIF9, KLHL18, SETD2 |
ENSG00000224397 | SMIM25 | 29207070, 25991924 | CEBPB |
ENSG00000204044 | SLC12A5-AS1 | 25991924 | CD40, MMP9, NCOA5, PCIF1, SLC12A5, ZNF335 |
ENSG00000204261 | PSMB8-AS1 | 25991924 | HLA-DMB, HLA-DOB, HLA-DQA2, HLA-DQB2, PSMB8, PSMB9, TAP1, TAP2, XXbac-BPG181M17.5, XXbac-BPG246D15.9 |
ENSG00000206337 | HCP5 | 25991924 | ATP6V1G2, ATP6V1G2-DDX39B, DDX39B, HLA-B, LTA, MCCD1, MICA, MICB, NFKBIL1, TNF |
ENSG00000226032 | AL035530.1 | 25991924 | RSPH3, TAGAP |
ENSG00000249086 | AC051649.1 | 25991924 | LSP1, MRPL23, PRR33, SYT8, TNNI2, TNNT3 |
ENSG00000235641 | LINC00484 | 25991924 | AUH |
ENSG00000261040 | WFDC21P | 25991924 | CA4, HEATR6, USP32 |
ENSG00000268734 | AC245128.3 | 25991924 | FCAR, KIR2DL4, KIR3DL1, KIR3DL2, NCR1, NLRP2, NLRP7 |
ENSG00000269489 | AL589765.6 | 25991924 | C2CD4D, CELF3, LINGO4, MRPL9, OAZ3, RIIAD1, RORC, SNX27, TDRKH, THEM4, THEM5 |
ENSG00000232807 | AL137186.2 | 25991924 | ANKRD16, FBXO18, GDI2, IL15RA, IL2RA |
Downregulated in CD and UC | |||
ENSG00000258498 | DIO3OS | 29207070, 25991924 | DIO3 |
ENSG00000240498 | CDKN2B-AS1 | 25991924 | CDKN2A, CDKN2B, MTAP, RP11-145E5.5 |
ENSG00000233006 | MIR3936HG | 25991924 | C5orf56, P4HA2, PDLIM4, SLC22A4, SLC22A5 |
ENSG00000259347 | AC087482.1 | 25991924 | SMAD3 |
ENSG00000259970 | AC099668.1 | 25991924 | AMIGO3, APEH, BSN, GMPPB, IP6K1, MST1, RNF123 |
ENSG00000264269 | AC016866.1 | 25991924 | DYM, SMAD7 |
Upregulated in UC | |||
ENSG00000255733 | IFNG-AS1 | 27492330, 25991924 | IFNG, IL22, IL26, MDM1 |
ENSG00000130600 | H19 | 27661667, 25991924 | MRPL23, TNNT3 |
ENSG00000212978 | AC016747.1 | 25991924 | AHSA2, C2orf74, KIAA1841, PEX13, USP34 |
ENSG00000224220 | AC104699.1 | 25991924 | DNMT3A, DTNB |
ENSG00000273782 | UCA1 | – | CYP4F11, CYP4F2, OR10H1, OR10H3, OR10H5 |
ENSG00000254166 | CASC19 | – | |
ENSG00000225582 | AC011193.1 | 25991924 | |
ENSG00000229425 | AJ009632.2 | 25991924 | |
ENSG00000232698 | AP001058.1 | 25991924 | AIRE, C21orf33, DNMT3L, ICOSLG, PFKL, PWP2, TRAPPC10 |
ENSG00000237499 | AL357060.2 | 25991924 | TNFAIP3 |
ENSG00000264968 | AC090844.2 | 25991924 | CSF3, GSDMA, GSDMB, IKZF3, LRRC3C, MED24, ORMDL3, PSMD3, ZPBP2 |
ENSG00000251301 | LINC02384 | 25991924 | IL22, MDM1 |
ENSG00000254211 | LINC01485 | 25991924 | CPEB4 |
ENSG00000256940 | AP001453.2 | 25991924 | BAD, CCDC88B, DNAJC4, ESRRA, FERMT3, FKBP2, GPR137, KCNK4, MACROD1, NUDT22, PLCB3, PPP1R14B, PRDX5, STIP1, TEX40, TRMT112, TRPT1, VEGFB |
ENSG00000257069 | AP001453.3 | 25991924 | BAD, CCDC88B, DNAJC4, ESRRA, FERMT3, FKBP2, GPR137, KCNK4, NUDT22, PLCB3, PPP1R14B, PRDX5, RPS6KA4, STIP1, TEX40, TRMT112, TRPT1, VEGFB |
Downregulated in UC | |||
ENSG00000227036 | LINC00511 | 25991924 | SLC39A11 |
ENSG00000170858 | LILRP2 | 25991924 | KIR2DL1, KIR2DL3, KIR2DL4, KIR3DL3, LILRB1, LILRB4 |
ENSG00000258867 | LINC01146 | 25991924 | GALC, GPR65, KCNK10 |
ENSG00000261266 | AC008870.3 | 25991924 | CHP2, DCTN5, ERN2, NDUFAB1, PALB2, PLK1 |
ENSG00000184809 | B3GALT5-AS1 | 26937624 | B3GALT5, SH3BGR |
ENSG00000267130 | AC008738.2 | 25991924 | CEBPA, CEBPG, LRP3, PEPD, SLC7A10 |
Upregulated in CD | |||
ENSG00000241549 | GUSBP2 | 27217703 | |
ENSG00000253838 | AC007991.2 | 25991924 | ADAM2, IDO1, IDO2 |
Downregulated in CD | |||
ENSG00000278217 | MALAT1 | 27217703 | AP000769.1, EHBP1L1, FAM89B, FRMD8, KCNK7, LTBP3, MAP3K11, SCYL1, SIPA1, SSSCA1 |
ENSG00000229005 | HNF4A-AS1 | 29361088 | FITM2, GDAP1L1, HNF4A, R3HDML, TTPAL |
ENSG00000232693 | AC012370.1 | 25991924 | SPRED2 |
Upregulated in CD vs UC | |||
ENSG00000238164 | TNFRSF14-AS1 | 25991924 | FAM213B, HES5, MMEL1, PANK4, PLCH2, TNFRSF14, TTC34 |
ENSG00000269667 | AC092723.1 | 25991924 | IRF8 |
