Table 2 Polymorphisms detected in genes involved in homocysteine metabolism
From: Disturbed homocysteine metabolism is associated with cancer
Gene | Polymorphisms | Amino acid change | Cancer type | OR values | References |
|---|---|---|---|---|---|
Methylene-tetrahydrofolate reductase (MTHFR) | 677C- > T | A226V | Endometrial carcinoma | 1.10 | |
Esophageal squamous cell carcinoma (SCC) | 1.47 | ||||
Breast cancer | 1.00a/1.12/1.00a | ||||
Acute lymphocytic leukemia (ALL) | 0.99/0.23 | ||||
Prostate cancer | 0.78 | ||||
Colorectal cancer | 1.78/1.00a/0.76 | ||||
1298A- > C | E443A | Prostate cancer | 0.58 | ||
Acute myeloid leukemia | 0.33/1.00 | ||||
Endometrial cancer | 0.88 | ||||
1793G- > A | R1793E | Colorectal cancer | 0.17 | ||
Acute myeloid leukemia | 1.00 | ||||
Methionine synthase reductase (MTRR) | 66A- > G | I22M | Leukemia | 1.00a | |
Colorectal cancer | 2.77/1.07 | ||||
Gastric cancer | 0.74/1.39 | ||||
Breast cancer | 4.45 | ||||
Methionine synthase (MTR) | 2756A- > G | D919G | Head and neck carcinoma | 1.10 | |
Colorectal cancer | 1.03/0.65/2.04 | ||||
Lung cancer | 1.34 | ||||
Hepatocellular carcinoma | 1.01 | ||||
Cervical cancer | 0.27 | ||||
Glioblastoma multiforme | 1.00a | ||||
Breast cancer | 1.00a | ||||
Squamous cell carcinoma | 1.00a | ||||
Gastric cancer | 1.06/1.35 | ||||
Pancreatic cancer | 1.08/3.35 | ||||
Methylene-tetrahydrofolate dehydrogenase (MTHFD1) | 1958G- > A | A653G | Gastric cancer | 2.05 | |
Leukemia | 0.80 | ||||
401G- > A | R134K | Gastric cancer | 1.43 | ||
Leukemia | 0.89 | ||||
Ovarian cancer | 0.97 | ||||
Betaine-homocysteine methyltransferase (BHMT) | 742G- > A | R239Q | Squamous cell carcinoma | 1.07 | |
Breast cancer | 0.98/0.12 | ||||
Uterine carcinoma | 0.64 | ||||
Ovarian cancer | 1.01 | ||||
Colorectal adenoma | 1.09 | ||||
Liver cancer | 0.98 | ||||
595G- > A | G199S | — | |||
716G- > A | Q239R | — | |||
1218G- > T | Q406H | — | |||
Cystathionine β-synthase (CBS) | 833T- > C | I278T | — | ||
699C- > T | Y233Y | — | |||
1080C- > T | A360A | — | |||
572C- > T | T191M | — | |||
139C- > T | S466L | — | |||
502G- > A | V168M | — | |||
797G- > A | R266K | — | |||
1150A- > G | K384E | — | |||
341C- > T | A114V | — | |||
919G- > A | G307S | — | |||
TCN 2 | 776 G > C | R259P | Colorectal adenoma | 0.753 | |
Colorectal cancer | 1.137 | ||||
Glioblastoma | 1.028 | ||||
Primary central nervous system lymphoma | 1.338 | ||||
Ovarian cancer | 1.389 | ||||
TYMS | TS 3́-UTR | — | Esophageal cancer | 0.73 | |
— | Stomach cancer | 1.12 | |||
TSER | — | Breast cancer | 1.09 |