Table 2 Polymorphisms detected in genes involved in homocysteine metabolism

From: Disturbed homocysteine metabolism is associated with cancer

Gene

Polymorphisms

Amino acid change

Cancer type

OR values

References

Methylene-tetrahydrofolate reductase (MTHFR)

677C- > T

A226V

Endometrial carcinoma

1.10

155

Esophageal squamous cell carcinoma (SCC)

1.47

156

Breast cancer

1.00a/1.12/1.00a

15, 99, 157

Acute lymphocytic leukemia (ALL)

0.99/0.23

87

Prostate cancer

0.78

158

Colorectal cancer

1.78/1.00a/0.76

85, 159,160,161

1298A- > C

E443A

Prostate cancer

0.58

79

Acute myeloid leukemia

0.33/1.00

87, 162

Endometrial cancer

0.88

155

1793G- > A

R1793E

Colorectal cancer

0.17

163

Acute myeloid leukemia

1.00

162

Methionine synthase reductase (MTRR)

66A- > G

I22M

Leukemia

1.00a

164, 165

Colorectal cancer

2.77/1.07

18, 165, 166

Gastric cancer

0.74/1.39

167, 168

Breast cancer

4.45

169

Methionine synthase (MTR)

2756A- > G

D919G

Head and neck carcinoma

1.10

170

Colorectal cancer

1.03/0.65/2.04

161, 170, 171

Lung cancer

1.34

172

Hepatocellular carcinoma

1.01

170, 173

Cervical cancer

0.27

14

Glioblastoma multiforme

1.00a

174

Breast cancer

1.00a

99

Squamous cell carcinoma

1.00a

98

Gastric cancer

1.06/1.35

168, 170, 175

Pancreatic cancer

1.08/3.35

170, 176

Methylene-tetrahydrofolate dehydrogenase (MTHFD1)

1958G- > A

A653G

Gastric cancer

2.05

102

Leukemia

0.80

177

401G- > A

R134K

Gastric cancer

1.43

102

Leukemia

0.89

177

Ovarian cancer

0.97

178

Betaine-homocysteine methyltransferase (BHMT)

742G- > A

R239Q

Squamous cell carcinoma

1.07

179

Breast cancer

0.98/0.12

111, 180

Uterine carcinoma

0.64

181

Ovarian cancer

1.01

182

Colorectal adenoma

1.09

183

Liver cancer

0.98

184

595G- > A

G199S

  

716G- > A

Q239R

  

1218G- > T

Q406H

  

Cystathionine β-synthase (CBS)

833T- > C

I278T

  

699C- > T

Y233Y

  

1080C- > T

A360A

  

572C- > T

T191M

  

139C- > T

S466L

  

502G- > A

V168M

  

797G- > A

R266K

  

1150A- > G

K384E

  

341C- > T

A114V

  

919G- > A

G307S

  

TCN 2

776 G > C

R259P

Colorectal adenoma

0.753

183

Colorectal cancer

1.137

185

Glioblastoma

1.028

174

Primary central nervous system lymphoma

1.338

186

Ovarian cancer

1.389

182

TYMS

TS 3́-UTR

Esophageal cancer

0.73

187

Stomach cancer

1.12

187

TSER

Breast cancer

1.09

187

  1. aPapers that reported no association have been given the value of 1.00