Table 2 Sequencing metrics for MinION datasets

From: Cas9-based enrichment and single-molecule sequencing for precise characterization of genomic duplications

Case number

Total raw reads

Total alignment-ready readsa

Read length (bp)a

Read Quality (bp)a

Mapped reads (%)

Aligned bases

Equivalent genome coverage

Number of reads mapping with target gene*

Reads ± 25 bp surrounding cleavage site (fold enrichment)

Mean

Median

Mean

Median

+ Strand guide

− Strand guide

1

274,500

27,886

3248

1590

8.9

9.2

97.53

88,356,565

0.029×

72

21 (700×)

15 (500×)

2

84,475

80,068

6067

3056

9.0

9.4

96.99

471,766,911

0.16×

436

67 (400×)

82 (500×)

  1. *Target gene coordinates
  2. VHL chr3:10,183,319-10,195,354, DMD chrX:31,137,345-33,357,726
  3. aFollowing adapter removal and quality filtering