Table 2 Sequencing metrics for MinION datasets
Case number | Total raw reads | Total alignment-ready readsa | Read length (bp)a | Read Quality (bp)a | Mapped reads (%) | Aligned bases | Equivalent genome coverage | Number of reads mapping with target gene* | Reads ± 25 bp surrounding cleavage site (fold enrichment) | |||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Mean | Median | Mean | Median | + Strand guide | − Strand guide | |||||||
1 | 274,500 | 27,886 | 3248 | 1590 | 8.9 | 9.2 | 97.53 | 88,356,565 | 0.029× | 72 | 21 (700×) | 15 (500×) |
2 | 84,475 | 80,068 | 6067 | 3056 | 9.0 | 9.4 | 96.99 | 471,766,911 | 0.16× | 436 | 67 (400×) | 82 (500×) |