Table 1 Results of label free and VTEA analysis of five nephrectomy samples.

From: Large-scale, three-dimensional tissue cytometry of the human kidney: a complete and accessible pipeline

Sample

% Cortex

Tissue volume mm3

SHG+

area % total

Total cell

Cell density cells/mm3

THP+

cells/mm3 (%)

AQP1+

cells/mm3

(%)

MPO+

cells/mm3

(%)

CD68+

cells/mm3

(%)

CD3+

cells/mm3

(%)

Siglec8+

cells/mm3

(%)

1

Figs. 3, 4

90.5

1.73

11.7

248,050

143,506

4495 (3.1)

21,807 (15.2)

2152 (1.5)

551 (0.3)

5481 (3.8)

15 (0.0001)

2

Supplementary 2A

89.9

0.62

10.9

154,471

249,772

14,166 (5.7)

21,281 (8.5)

864 (0.3)

11 (0.0)

298 (0.1)

0 (0)

3

Supplementary 2B

60.4

1.03

12.3

214,769

207,947

38,840 (18.7)

40,221 (19.4)

5852 (2.8)

435 (0.2)

4131 (2.0)

0 (0)

4

Supplementary 2C

100

0.45

10.4

112,360

250,786

23,826 (9.5)

31,533 (12.6)

11,595 (4.6)

1129 (0.5)

16,452 (16.6)

0 (0)

5

Supplementary 2D

44.7

0.72

7.7

234,685

326,625

99,141 (30.4)

63,357 (19.4)

3592 (1.1)

1063 (0.3)

8706 (2.7)

0 (0)