Table 1 The incidence and location by cytogenetic band of tCN-LOH 12q and 6q identified in this study or previously published cases of B-ALL

From: SH2B3 inactivation through CN-LOH 12q is uniquely associated with B-cell precursor ALL with iAMP21 or other chromosome 21 gain

Study

No. B-ALL patients

Patient ID

12q CN-LOH

6p CN-LOH

Chromosome 21 CN status

Present study

302

5

12q13.1-12qtel

Ā 

iAMP21

12

12q14-12qtel

Ā 

OSA21

25

12q14-12qtel

Ā 

iAMP21

28

12q12-12qtel

Ā 

OSA21

44

12q11-12qtel

Ā 

iAMP21

45

12q13.1-12qtel

Ā 

iAMP21

78

12q13.1-12qtel

Ā 

iAMP21

88

12q14-12qtel

Ā 

iAMP21

71

Ā 

6ptel-6p22.1

iAMP21

85

Ā 

6ptel-6p21.2

iAMP21

Baughn 2015 [17]

65

Not reported

12q24.12-q24.32

Ā 

iAMP21

Kawamata 2008 [15]

399

Not reported

12q? to 12qtel

Ā 

21q CN > 5

Not reported

12q? to 12qtel

Ā 

21q CN > 5

Not reported

Ā 

6ptel-6p?

Normal

Not reported

Ā 

6ptel-6p?

21q CN > 5

Not reported

Ā 

6pter-6p?

21 CN 3–4

Not reported

Ā 

6pter-6p?

21 CN 3–4

Lundin 2016 [16]

181

28

Ā 

6ptel-6p22.2

Normal

31

Ā 

6ptel-6p22.1

Unknown

19

12q14.1-12qtel

Ā 

Ā +21,+21

Mullighan 2007 [20]

192

TCF3-PBX1 #3

Ā 

6ptel-6p22.1

Unknown

ETV6-RUNX1 #10

Ā 

6ptel-6p21.1

Unknown

HD 47-50 #22

Ā 

6ptel-6p22.1

Unknown

HD > 50 #34

Ā 

6ptel-6p22.1

Unknown

Pseudodiploid #8

Ā 

6p12.3-6p21.31

Unknown

Paulsson 2010 [6]

116

HD > 50 (All)

Ā Ā Ā 

Ninomya 2012 [19]

21

AA214

Ā 

6-p12.1-6pcen

Normal

AA217

Ā 

6p21.33-6p25.3

Normal

  1. Position of CN-LOH and chromosome 21 CN reported by Kawamata [15] are estimated from Fig.Ā 2a. HD (high hyperdiploid)