Table 2 Summary of multipoint and two-point linkage analyses

From: DNA sequence-level analyses reveal potential phenotypic modifiers in a large family with psychiatric disorders

Region

Start

End

Size

Max mLOD

Model

N genes

Max 2pt LOD

Model

Top 2pt variant

Closest gene distance

chr1q

223,246,661

224,932,082

1,685,421

5.6

B

14

9.3

C

chr1: 223,804,982

[CAPN8] intronic

chr5q

58,721,609

67,098,280

8,376,671

3.5

F

33

5.1

F

rs377870

[C5orf64] intronic

chr11q1

87,597,790

88,350,687

752,897

5.9

C

3

10.8

C

chr11: 88,219,524

[]GRM5 18,221 bp

chr11q2

99,616,360

99,753,867

137,507

3.7

F

1

8.5

F

chr11: 99,653,622

[CNTN5] intronic

chr1p

69,000,000

71,000,000

2,000,000

2.2

F

7

2.3

F

rs149129136

[]LRRC7 151,267 bp

chr2p

17,768,000

18,351,000

583,000

2.3

P

5

2.3

E

rs4832502

[]KCNS3 24,483 bp

chr3q

162,000,000

172,000,000

10,000,000

2.3

F

36

3.6

C

chr3: 164,306,631

[]SI  390,056 bp

chr4q

158,000,000

164,000,000

6,000,000

2.2

F

15

3.6

F

rs149639769

[]FSTL5 1,432,353 bp

chr16p

16,000,000

33,000,000

17,000,000

2.6

G

222

3.4

G

chr16: 23,353,022

[SCNN1B] intronic

  1. Start and end position given for hg19; Max mLOD, maximum multipoint LOD score; Top 2 pt LOD, two-point LOD score; and the closest gene to the highest 2 pt LOD with the brackets denoting the relative position. Model definitions are shown in Table 1