Table 1 GPC sample sizes by genotyping batch and assigned ancestry. For constituent datasets in the current analysis (Genotyping Wave/Batch), the commercial genotyping array and the numbers of individuals assigned to African, Latino, and European ancestry groups are displayed. Within each ancestry group, the reported total is based on those quantities appearing in boldface
Genotyping Wave/Batch | Illumina SNP array | Assigned ancestry | |||||
|---|---|---|---|---|---|---|---|
African (admixed) | Latino (admixed) | European | |||||
Cases | Controls | Cases | Controls | Cases | Controls | ||
GPC-AA w1 | Omni2.5 | 1737 | 841 | 5 | 10 | 28 | 21 |
GPC-AA w2 | Omni2.5 | 638 | 406 | 0 | 0 | 10 | 7 |
GPC-Latino w1 | Omni2.5 | 99 | 63 | 634 | 1743 | 218 | 224 |
GPC-Latino w2 | Omni2.5 | 55 | 29 | 115 | 741 | 118 | 145 |
GPC-Global | Global Screening Array | 1233 | 1110 | 148 | 180 | 627 | 530 |
COGS-AA | Multi-ethnic Global | 645 | 390 | 1 | 5 | 31 | 27 |
MGS-AA, SEK Controls | Multi-ethnic Global | 1745 | 1079 | 0 | 1 | 12 | 7 |
Costa-Rican | Multi-ethnic Global | 7 | 0 | 337 | 426 | 54 | 41 |
ICCBD-USC | OmniExpress | 9 | 4 | 2 | 7 | 513 | 1263 |
COGS (Caucasian) | PsychArray | 19 | 0 | 7 | 4 | 2158 | 440 |
GPC (Caucasian) | PsychArray | 55 | 9 | 15 | 21 | 2358 | 1891 |
total N | 6152 | 3918 | 1234 | 3090 | 6046 | 4534 | |
