Table 1 Phenotypic description of individuals with TRPC6 variantsa,b.

From: Mutations in trpγ, the homologue of TRPC6 autism candidate gene, causes autism-like behavioral deficits in Drosophila

GENERAL INFORMATION

Participant ID

F2749-1

2-1280-003

3-0817-000

7-0089-003

MSSNG00188-003

MSSNG00070-003

SSC04382

iHART1937

iHART1939

Date of Birth (DOB - MM/YY);

07-2002

09-2008

10-2011

06-2007

NA

NA

NA

NA

NA

Sex

Male

Female

Female

Female

Male

Male

Male

Male

Male

Genetic data

Variant genomic position [hg38]

t[3;11] [p21;q22]

g.101488935 A > G

g.101489024_101489026delinsGG

g.101504768_101504792dup

g.101491611dup

g.101583364delG

g.101583497 G > A

g.101489023delT

g.101489023delT

cDNA variant

NA

c.1293 + 2 T > C

c.1204_1206delinsCC

c.177_201dup

c.1073dup

c.140delC

c.7 C > T

c.1207delA

c.1207delA

Protein change

NA

p.?

p.T402Pfs

p.R68fs

p.H358fs

p.P47Rfs*33

p.Q3*

p.M403Wfs*33

p.M403Wfs*33

Inheritance

de novo

Maternal

Maternal

Paternal

Maternal

Unknown; not maternal

Paternal

Maternal

Maternal

gnomAD frequency

Not applied

0

0

0

0.00000409

0

0.0000956

0.00000398

0.00000398

Development

ASD evaluation

DSM-IV and CARS (severe autism)

ADI/ADOS

ADOS

ASD

ADI/ADOS

ASD

ASD

ADI-R

ASD by ADI-R

Global Ability

Low

Average

NA

NA

NA

NA

NA

NA

NA

Intellectual disability; IQ

Yes (unable to learn how to read or to recognize numbers)

Wechsler; Average IQ (105 standard score)

NA

Yes

NA

NA

NA

NA

NA

Adaptive Behavior

NA

VABS; very low daily adaptive skills (74 standard score)

VABS; impaired; extremely low daily adaptive skills (69 standard score)

NA

NA

NA

NA

NA

NA

Socialization

Low

Extremely low (68 standard score) based on VABS

Extremely low (65 standard score) based on VABS

NA

NA

NA

NA

NA

NA

Age of walking

18 months

12 months

NA

NA

NA

NA

NA

NA

NA

Age of first words

Non-verbal

45 months

NA

NA

NA

NA

NA

NA

NA

Development (continued)

Language ability

None

Average receptive vocabulary skills; low average overall language skills

Language skills limited; fall in very low range for communication; based on ADOS and VABS

NA

NA

NA

NA

NA

NA

Behavioral issues

Repetitive behaviors, resistant to change routine

Repetitive behaviors, resistant to change

NA

NA

NA

NA

NA

NA

NA

Seizures/epilepsy

Yes

No

No

No

NA

NA

NA

NA

NA

Feeding issues

No

NA

NA

 

NA

NA

NA

NA

NA

Other neuropsychiatric or neurodevelopmental disorder

Hyperactivity and anxiety behavior

NA

NA

Auditory Processing Disorder

NA

NA

NA

NA

NA

Other

Eye abnormalities/vision problems

No

NA

NA

NA

NA

NA

NA

NA

NA

Ears/hearing loss

None

NA

NA

Sensorineural hearing loss

NA

NA

NA

NA

NA

Other Dysmorphologies/congenital abnormalities

None

NA

NA

Dysmorphic, unspecified

NA

NA

NA

NA

NA

Other genetic variants

Not identified in WES37

Variant is also seen in unaffected brother

Additional mutation: 7p22.3, 506 kb DUP, including BRAT1, unknown origin

Not identified

Additional mutation: Xq13.3-q21.1, 9.4 Mb DUP including ABCB7, FGF16, ATRX, ATP7A, PGK1, TBX22, BRWD3, POU3F4; maternal

Not identified

Not identified

Variant is also seen in affected brother

Variant is also seen in affected brother

Family history

No family history among 1st related relatives

NA

Family history of ASD, ADHD, depression and learning disability

Family history of diabetes, and schizophrenia

NA

NA

NA

NA

NA

Source

Griesi-Oliveira et al. 37

MSSNG21

MSSNG21

MSSNG21

MSSNG21

MSSNG21

Griesi-Oliveira et al. 37

Ruzzo et al.104

Ruzzo et al.104

  1. aVariants were mapped to RefSeq transcript NM_004621.5 isoform of TRPC6 and are based on Human Genome Build GRCh38. For patient F2749-1, the translocation breakpoint was mapped in VPRBP (NM_001387579.1) and TRPC6 (NM_004621). All cases in this table were from MSSNG except for SSC04382, which is from Simon Simplex Collection (SSC) and has also been reported in Griesi-Oliveira et al. (2014) [33]. All variants are heterozygous. All variants from MSSNG were confirmed using Sanger sequencing. We did not have DNA from the SSC case (SSC04382) to perform a Sanger validation.
  2. bExcept for the variant c.140delC predicted as likely pathogenic (ACMG: PVS1, PM2), all the others were predicted to be pathogenic (ACMG: PVS1, PM2, PP3).