Table 1 Genes that are associated with ATAC-seq peaks at their promoters (TSS ± 2 kb).
From: Unraveling the epigenomic and transcriptomic interplay during alcohol-induced anxiolysis
Peak ID | Chromosome | Start | End | Gene name | TSS ± 2 kb | Ethanol/Control: logFC | Ethanol/Control: Q Value |
|---|---|---|---|---|---|---|---|
peak_3217 | 1 | 78998888 | 79004845 | Hif3a | −1019 | 0.739398 | 1.51668E−10 |
peak_68740 | 20 | 8090968 | 8098770 | Fkbp5 | 0 | 0.563998 | 1.33121E−05 |
peak_40629 | 15 | 30183087 | 30184570 | LOC290156 | 0 | 0.613106 | 0.000106 |
peak_40797 | 15 | 31685828 | 31687526 | LOC108353020 | 148 | 0.775034 | 0.000129 |
peak_108576 | 8 | 53142419 | 53148464 | Zbtb16 | 0 | 0.419321 | 0.002019 |
peak_40843 | 15 | 32135389 | 32137992 | LOC102556508 | 0 | 0.482184 | 0.002740 |
peak_40647 | 15 | 30553539 | 30555161 | Trav14s1 | 677 | 0.779843 | 0.003097 |
peak_40834 | 15 | 32042566 | 32045051 | LOC103693854 | 0 | 0.460100 | 0.005350 |
peak_40541 | 15 | 29366687 | 29370177 | LOC684995 | 16 | 0.555889 | 0.006129 |
peak_63413 | 2 | 140705353 | 140708314 | Mgst2 | −82 | 0.536870 | 0.009204 |
peak_3216 | 1 | 78995896 | 78998702 | Hif3a | 0 | 0.431469 | 0.010197 |
peak_96228 | 6 | 76175484 | 76176788 | Psma6 | 1024 | 0.605321 | 0.012949 |
peak_40796 | 15 | 31675907 | 31679085 | LOC102555014 | 0 | 0.393897 | 0.014117 |
peak_10302 | 1 | 221753875 | 221755151 | Pygm | −1174 | 0.685527 | 0.037892 |
peak_44676 | 16 | 8497159 | 8500489 | Ogdhl | 0 | 0.378384 | 0.073691 |
peak_67100 | 2 | 239413152 | 239414771 | Cxxc4 | −111 | −0.417057 | 0.078753 |
peak_86677 | 5 | 33180626 | 33182976 | Maged2 | 0 | −0.317445 | 0.082602 |
peak_62601 | 2 | 105000505 | 105002148 | LOC682402 | 0 | −0.552217 | 0.100118 |
peak_105292 | 7 | 130540544 | 130541153 | Acr | −167 | 0.764952 | 0.100712 |
peak_40773 | 15 | 31510679 | 31512130 | LOC682708 | 0 | 0.482470 | 0.112276 |
peak_87750 | 5 | 69832439 | 69834831 | Nipsnap3b | 0 | −0.451526 | 0.112958 |
peak_44673 | 16 | 8466095 | 8467877 | LOC102550503 | 0 | 0.482126 | 0.123118 |
peak_9080 | 1 | 201498140 | 201500195 | Htra1 | 0 | 0.371520 | 0.134251 |
peak_21401 | 11 | 30362069 | 30365302 | Sod1 | 0 | −0.284925 | 0.161426 |
peak_92245 | 5 | 165026989 | 165029576 | LOC108351059 | 0 | 0.393443 | 0.165461 |
peak_97599 | 6 | 111475449 | 111477839 | Slirp | 0 | −0.353192 | 0.165461 |
peak_97599 | 6 | 111475449 | 111477839 | Alkbh1 | 0 | −0.353192 | 0.165461 |
peak_40642 | 15 | 30533803 | 30535711 | LOC102552674 | 0 | 0.512589 | 0.170042 |
peak_103519 | 7 | 109203060 | 109206986 | Zfat | 525 | 0.314836 | 0.181991 |
peak_1056 | 1 | 31493765 | 31495003 | LOC100911237 | 0 | −0.690268 | 0.185516 |
peak_34139 | 14 | 7617155 | 7618444 | Slc10a6 | 0 | 0.602676 | 0.190299 |
