Table 1 Cohorts analyzed.

Number	Study	Genotyping array	N subjects	N cases	N Controls	N CNV Carriers	N CNVs detected	N Deletions	N Duplications	CNV Span	SD	CNVs per Carrier	SD	Avg Length	SD
1	MRSC	OmniExpressExome8 + Custom	1374	149	1225	1147	2927	1399	1528	0.26	0.32	2.55	1.74	0.10	0.12
14	NSS1	OmniExpressExome8 + Custom	3664	890	2774	3031	7363	3308	4055	0.31	0.42	2.43	1.66	0.12	0.15
16	PPDS	OmniExpressExome8 + Custom	4394	781	3613	3649	9012	4052	4960	0.28	0.37	2.47	1.67	0.11	0.16
17	PTS1	PsychArray 1.1	364^b	215	149	271	556	214	342	0.32	0.48	2.02	1.32	0.15	0.18
21	PSY2	PsychArray 1.1	4446	2226	2220	2997	6061	2929	3132	0.43	0.90	2.02	1.59	0.20	0.27
37	PSY3	PsychArray 1.1	699^a	254	445	491	1017	537	480	0.37	0.53	2.07	1.57	0.18	0.23
41	NCMH	PsychArray 1.1	961	460	501	598	1067	442	625	0.43	0.67	1.78	1.08	0.23	0.31
52	FTCB	PsychChip	756	59	697	504	991	450	541	0.31	0.42	1.97	1.39	0.16	0.19
54	GRAC	PsychArray 1.1	151	66	85	99	174	91	83	0.29	0.31	1.76	1.11	0.16	0.14
55	GMRF	PsychArray 1.1	192	95	97	105	177	80	97	0.40	0.56	1.69	0.96	0.21	0.19
60	UKBB	Affymetrix UK Biobank Axiom array	97,382	7841	89,541	55,872	73,691	48,061	25,630	0.36	0.57	1.32	0.56	0.27	0.39

Number study accession number in PGC-PTSD Freeze 2, N sample size, CNV Span mean genomic length spanned by CNV (in megabases), in CNV carriers only, N CNV mean number of detected CNVs, among CNV carriers only; Avg Length across carriers, the mean of subjects’ mean CNV length (in megabases).
^aAnalyzed as a case/control study with 254 cases and 445 controls.
^bAnalyzed as a case/control study with 215 cases and 149 controls.

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