Table 1 Recent large-scale efforts generating RNA-seq data to identify differential gene expression associated with schizophrenia in post-mortem human brains.
Project | Cohorts | Brain Region | Details | Scz/Adult Control | Link | Refs. |
---|---|---|---|---|---|---|
BrainSeq | LIBD | Phase1: DLPFC | polyA+ RNA-seq. | 155/196 | [3] | |
Phase2: DLPFC | Ribo-Zero | 153/226 | [2] | |||
HIPPO | RNA-seq | 133/200 | [2] | |||
Jaffe, et al. (2020) | LIBD | dentate gyrus | RNA-seq of granule cell layer | 75/93 | [9] | |
CommonMind Consortium | MSSM, Penn, Pitt, HBCC | DLPFC | Ribo-Zero RNA-seq | 258/279 | [8] | |
341/437 | ||||||
PsychENCODE | CommonMind, LIBD, HBCC, UCLA_ASD, BrainGVEx | Cortex | RNA-seq includes CommonMind and LIBD data | 559/936 | ||
PsychENCODE | Stanley Medical Research Institute, Victorian Brain Bank, Pitt, Imperial College London, Harvard Brain Bank | Cortex | microarray | 159/293 | Ref [5] | [5] |