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Integrating genome-wide information and wearable device data to explore the link of anxiety and antidepressants with pulse rate variability

Abstract

This study explores the genetic and epidemiologic correlates of long-term photoplethysmography-derived pulse rate variability (PRV) measurements with anxiety disorders. Individuals with whole-genome sequencing, Fitbit, and electronic health record data (N = 920; 61,333 data points) were selected from the All of Us Research Program. Anxiety polygenic risk scores (PRS) were derived with PRS-CS after meta-analyzing anxiety genome-wide association studies from three major cohorts- UK Biobank, FinnGen, and the Million Veterans Program (NTotal =364,550). PRV was estimated as the standard deviation of average five-minute pulse wave intervals over full 24-hour pulse rate measurements (SDANN). Antidepressant exposure was defined as an active antidepressant prescription at the time of the PRV measurement in the EHR. Anxiety PRS and antidepressant use were tested for association with daily SDANN. The potential causal effect of anxiety on PRV was assessed with one-sample Mendelian randomization (MR). Anxiety PRS was independently associated with reduced SDANN (beta = −0.08; p = 0.003). Of the eight antidepressant medications and four classes tested, venlafaxine (beta = −0.12, p = 0.002) and bupropion (beta = −0.071, p = 0.01), tricyclic antidepressants (beta = −0.177, p = 0.0008), selective serotonin reuptake inhibitors (beta = −0.069; p = 0.0008) and serotonin and norepinephrine reuptake inhibitors (beta = −0.16; p = 2×10−6) were associated with decreased SDANN. One-sample MR indicated an inverse effect of anxiety on SDANN (beta = −2.22, p = 0.03). Anxiety and antidepressants are independently associated with decreased PRV, and anxiety appears to exert a causal effect on reduced PRV. Those observational findings provide insights into the impact of anxiety on PRV.

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Fig. 1: Distribution of standard deviation of average five-minute pulse wave intervals over full 24-hour pulse rate measurements (SDANN).
Fig. 2: Effect of antidepressants on the standard deviation of average five-minute pulse wave intervals over full 24-hour pulse rate measurements (SDANN).

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Data availability

All data generated in the present study are reported in the manuscript and its supplemental material. All of Us Research Program data are available at https://allofus.nih.gov/get-involved/opportunities-researchers. UK Biobank genome-wide association statistics are available at https://pan.ukbb.broadinstitute.org/. FinnGen genome-wide association statistics are available at https://www.finngen.fi/en/access_results. Million Veteran Program genome-wide association statistics are available at https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs001672.v11.p1.

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Acknowledgements

The authors thank the participants and the investigators involved in the UK Biobank, the FinnGen Project, the Million Veteran Program, and the All of Us Research Program. This study was supported by grants from One Mind and the National Institutes of Health (RF1 MH132337, R33 DA047527, T32 MH014276, and K99 AG078503). The All of Us Research Program is supported by the National Institutes of Health, Office of the Director: Regional Medical Centers: 1 OT2 OD026549; 1 OT2 OD026554; 1 OT2 OD026557; 1 OT2 OD026556; 1 OT2 OD026550; 1 OT2 OD 026552; 1 OT2 OD026553; 1 OT2 OD026548; 1 OT2 OD026551; 1 OT2 OD026555; IAA #: AOD 16037; Federally Qualified Health Centers: HHSN 263201600085U; Data and Research Center: 5 U2C OD023196; Biobank: 1 U24 OD023121; The Participant Center: U24 OD023176; Participant Technology Systems Center: 1 U24 OD023163; Communications and Engagement: 3 OT2 OD023205; 3 OT2 OD023206; and Community Partners: 1 OT2 OD025277; 3 OT2 OD025315; 1 OT2 OD025337; 1 OT2 OD025276. In addition, the All of Us Research Program would not be possible without the partnership of its participants.

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EF and RP designed the study. EF analyzed the data. DK and GAP supported the statistical analyses. EJM, RL, and MBS supported the analyses of the clinical variables. EF and RP wrote the manuscript. All the other authors provided critical feedback, context interpretation, draft revision, and editing. RP supervised the study and received the primary funding that supported the study.

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Correspondence to Eleni Friligkou or Renato Polimanti.

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Competing interests

RP reported receiving personal fees for editorial work on the journal Complex Psychiatry from Karger Publishers and a research grant from Alkermes outside the submitted work. MBS reported consulting for Acadia Pharmaceuticals Inc., Aptinyx Inc., ATAI Life Sciences, Biogen Inc., Bionomics, BigHealth, BioXcel Therapeutics Inc, Boehringer Ingelheim, Clexio Biosciences Ltd, Eisai Co Ltd, EmpowerPharm, Engrail Therapeutics, Janssen Pharmaceuticals, Jazz Pharmaceuticals, NeuroTrauma Sciences LLC, PureTech Health, Sage Therapeutics, Sumitomo Pharma Co Ltd, and Roche-Genentech; and receiving stock options from Oxeia Biopharmaceuticals Inc and EpiVario outside the submitted work; serving as editor in chief for Depression and Anxiety, deputy editor for Biological Psychiatry, and co-editor in chief for Psychiatry for UpToDate for compensation. RL reported receiving speaker honoraria, advisory board fees, and research funding from Medtronic; speaker honoraria and research funding from Abbott/St Jude; and research funding from Boston Scientific. EJM reported consulting for Eidos, Pfizer, Siemens, Alnylam, and Roivant and receiving research funding from Eidos, Pfizer, and Argospect. No other disclosures were reported.

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Friligkou, E., Koller, D., Pathak, G.A. et al. Integrating genome-wide information and wearable device data to explore the link of anxiety and antidepressants with pulse rate variability. Mol Psychiatry 30, 2309–2315 (2025). https://doi.org/10.1038/s41380-024-02836-7

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