Fig. 2: Identifying significantly altered ASVs between control and antibiotic-exposed mice.
From: Influence of the early-life gut microbiota on the immune responses to an inhaled allergen
Unsupervised hierarchical clustering of differentially abundant ASVs from 92 fecal samples (columns) from 42 individual mice across multiple timepoints, identified using DESeq2, with false discovery rate (FDR) set to p < 0.01. Samples are color-coded by treatment, day of life, and body site. Rows indicate statistically significant taxa (n = 58), taxa annotation at the genus level (species level information also included when available, annotated as: genus_species).
