Table 2 Statistical evidence for association of ASD genes based on rare de novo transmitted sequence variation and de novo CNVs.

FDR ≤ 0.01

0.01 < FDR ≤ 0.05

0.05 < FDR ≤ 0.1

ADNP^a, ANK2^a, ANKRD11, AP2S1, ARID1B^a, ASH1L^a, BCL11A^b, CHD2^a, CHD8^a, CTNNB1, DEAF1, DNMT3A^b, DPYSL2, DSCAM^a, DYNC1H1, DYRK1A^a, FOXP1^b, GABRB3^b, GIGYF1^b, GRIN2B^a, KCNQ3, KDM5B ^a, KDM6B^b, KMT2C^a, MAP1A, MBD5^c, MED13L, MKX, MYT1L^b, NRXN1^a, PAX5, POGZ^a, PTEN^a, RAI1, RORB, SCN2A^a, SETD5^a, SHANK2^a, SHANK3^a, SIN3A, SLC6A1^b, SRPR, SUV420H1^a, SYNGAP1^a, TBL1XR1, TLK2, WAC^a

ASXL3, CACNA1E, CELF4, CREBBP, EIF3G, FOXP2, GFAP, GNAI1, IRF2BPL^c, KIAA0232, LDB1, NSD1, PHF12^b, PHF2, PHF21A, PPP2R5D, PRR12, RFX3, SATB1, SKI, SMARCC2, SPAST^b, STXBP1, TBR1^a, TCF20, TCF4, TCF7L2^a, TM9SF4, TRIP12^a, VEZF1, ZMYND8

CACNA2D3, CORO1A, DIP2A^c, ELAVL3, GABRB2, GRIA2, HDLBP, HECTD4, KCNMA1, KMT2E^c, LRRC4C, NACC1, NCOA1, NR3C2, NUP155, PPP1R9B, PPP5C, PTK7^c, SCN1A, TAOK1, TEK, TRAF7, TRIM23, UBR1