Table 1 tRF and tiRNA databases
From: Action mechanisms and research methods of tRNA-derived small RNAs
Name | Characteristics | Website |
|---|---|---|
BBcancer | Includes data on the expression of various RNA types, including tRFs, in 5040 normal and cancer blood samples from 15 cancer types. | |
DASHR v2.0 | This was the first database to integrate human sncRNA genes with mature product profiles from RNA-seq. | |
GtRNAdb | The most frequently cited source of genetic information for web-based tRNA, data can be retrieved using sequences or genetic characteristics. | |
MINTbase | Provides easy access to information about the maximum abundance of an tRF, its specific data, and information on its parent tRNA modifications. | |
MINTmap | Identifies and quantifies tRFs by mining deep-sequencing data, and calculates the original and normalized abundance of an tRF. | |
PtRFdb | Very convenient for users to verify and further understand the characteristics of plants. | |
RNA FRABASE | Allows users to autonomously search for the required three-dimensional fragments within the RNA structure. | |
SPORTS1.0 | Optimized for tsRNA from sRNA-seq data and relies on nucleotide mismatches in sRNA to predict potential RNA modification domains. | https://elkssl99cd2175108d157588c04758296d1cfclib.link.nbu.edu.cn:8443/junchaoshi/sports1.0 |
tDRmapper | Supplies a standardized naming method and quantitative scheme for tRFs and facilitates discovery of the biological functions of tRFs. | |
tRF2Cancer | Accurately recognizes tRFs and evaluates their expression in a variety of cancers. | |
tRFdb | The first tRF database; the retrieval tRF sequences may have originated from the tRNA genome coordinates and names. | |
tRFexplorer | Allows researchers to study the potential biological effects of tRF without any direct experimental evidence. |
