Table 2 Capability of biosynthesis of amino acids, vitamins and cofactors in Paraescarpia echinospica and its symbiont

From: Genomic, transcriptomic, and proteomic insights into the symbiosis of deep-sea tubeworm holobionts

Nutrients

Description

Symbiont

P. echinospica

Biosynthesis of amino acids

 NEFAAs

A, C, D, E, G, P, Q, R, S, Orn

+

+

EFAAs

H, I, K, L, M, V, W, bA

+

 

Ta, hypoTa, T, Y

+

 

F, N

Biosynthesis of vitamins and cofactors

 Vitamin B1

Thiamine

+

 Vitamin B2

Riboflavin

+

 Vitamin B3

Nicotinate and nicotinamide

+

 Vitamin B5

Pantothenate

+

+

 Vitamin B6

Pyridoxine

+

+

 Vitamin B7

Biotin

+

 Vitamin B9

Folate

+

 Vitamin B12

Cobalamin

 Vitamin K2

Menaquinone

+

 Coenzyme A

CoA

+

+

 Coenzyme Q

Ubiquinone

+

 

Protoheme (heme)

+

 

Siroheme

+

  1. Amino acids: A—Alanine; bA—β-Alanine; C—Cysteine; D—Aspartate (aspartic acid); E— Glutamic acid; F—Phenylalanine; G—Glycine; H—Histidine; hypoTa—Hypotaurine; I—Isoleucine; K—Lysine; L—Leucine; M—Methionine; N—Asparagine; Orn—Ornithine; P—Proline; Q—Glutamine; R—Arginine; S—Serine; T—Threonine; Ta—Taurine; V—Valine; W—Tryptophan; Y—Tyrosine; Complete and missing pathways are indicated by ‘+’ and ‘−’, respectively