Fig. 3: Genome functional annotation. | The ISME Journal

Fig. 3: Genome functional annotation.

From: Genomics and metatranscriptomics of biogeochemical cycling and degradation of lignin-derived aromatic compounds in thermal swamp sediment

Fig. 3

Annotation of key genes and pathways involved in energy and carbon metabolism used kofamscan 1.1.0 profile hidden Markov models (HMMs) and select PFAM and TIGRFAM HMMs. Nitrogen cycling genes are shown in green, sulfur cycling in purple, dehalogenation in red, photosynthesis in pink, H2-oxidation in gold, carbon fixation in teal, arsenate metabolism in yellow, oxidative phosphorylation in blue, and aromatic degradation in orange. Number of CAZymes in each class were determined using dbCAN2. W–L Wood–Ljungdahl, 3HP 3-hydroxypropionate, 4-HB 4-hydroxybutyrate, p-HB p-hydroxybenzoate, PCA protocatechuate, bKa beta-ketoadipate, GH glycoside hydrolases, GT glycosyltransferases, PL polysaccharide lyases, CE carbohydrate esterases, AA auxiliary activities.

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