Table 1 DmdR1-binding sites in 11 siderophore BGCs upregulated under iron-restricted conditions.
BGC | BGC number | Species | Gene | DmdR1-binding sites (5′-3′ sequence) |
|---|---|---|---|---|
Desferrioxamine B | 1 | S. kanamyceticus | CP970_27940 | TTAGGTTAGGCTCACCTAA (63 nt) ATG |
4 | S. venezuelae | SVEN2570 | TTAGGTTAGGCTaACCTAA (50 nt) ATG | |
6 | S. roseosporus | CP979_13235 | TTAGGTTAGGCTaACCTtA (54 nt) ATG | |
9 | S. rimosus | CP984_32060 | TTAGGTTAGGCTtACCTcA (115 nt) ATG | |
12 | S. cinereoruber | CP977_12440 | TTAGGTTAGGCTCACCTAc (68 nt) ATG | |
17 | S. coelicolor | SCO2782 | TTAGGTTAGGCTCACCTAA (63 nt) ATG | |
19 | S. coeruleorubidus | CP976_16210 | TTAGGTTAGGCTtACCTAA (62 nt) ATG | |
Coelichelin | 15 | S. coelicolor | SCO0498 | TTAGcTTAGGCTCACCTAA (25 nt) ATG |
SCO0490 | TTAGGTTAGGCTCgCCTAA (49 nt) ATG | |||
21 | S. coeruleorubidus | CP976_37645 | TgAGcTTAGcCTtACCTAA (104 nt) ATG | |
CP976_37695 | TTAGGTTAGGCTCgCCTAA (50 nt) ATG | |||
Bacillibactin | 7 | S. rimosus | CP984_01935 | TaAGGTaAGGCTCgCCTTA (49 nt) ATG |
CP984_01965 | TaAGGTTAGcCTaACCTAA (124 nt) ATG | |||
Scabichelin | 11 | S. cinereoruber | CP977_03980 | TTAGGTTAGGCTaAgCTAA (83 nt) ATG |
CP977_04015 | TTAGGTaAGcCTtACCTAA (101 nt) ATG | |||
CP977_04025 | TTAGGTaAGcCTtACCTAA (40 nt) ATG |
