Fig. 3: Abundance of TBDTs in metaproteomic and metagenomic datasets by substrate targeted. | The ISME Journal

Fig. 3: Abundance of TBDTs in metaproteomic and metagenomic datasets by substrate targeted.

From: Changing expression patterns of TonB-dependent transporters suggest shifts in polysaccharide consumption over the course of a spring phytoplankton bloom

Fig. 3

a Average abundance of the most abundant categories of proteins across the six sampling dates, with TonB-dependent transporters (TBDT) subdivided further into average abundance of polysaccharide-transporting proteins (outermost ring indicates individual substrate categories where large enough to be included). b TBDTs where substrate could be assigned, based on proximity of CAZymes in MAGs. c Gene frequency (reads per kilobase per million—RPKM) of TBDTs where substrate could be assigned using CAZyme proximity. Note omission of CAZyme associated, no substrate predicted proteins from b and c, and that values in c are not directly comparable with those in Fig. 1, as they are cumulative over individual genes, not entire genomes.

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