Fig. 6: Bioinformatical analysis of SIPs. | The ISME Journal

Fig. 6: Bioinformatical analysis of SIPs.

From: Widespread and largely unknown prophage activity, diversity, and function in two genera of wheat phyllosphere bacteria

Fig. 6

A Performance of PHASTER and VIBRANT prophage predictions relative to the 120 SIPs discovered using VIP-Seq. Performance metrics detailed in Section 2.6. B Distribution of prophage region size for high-quality prophage predictions compared to that of all SIPs. C Same as (B), but with prophage region GC content relative to that of the host bacterial strain. D Bar plot showing the number of prophage predictions observed to be spontaneously active for each of PHASTER and VIBRANT’s confidence predictions (labels masked “High”, “Mid”, and “Low” in order of prediction confidence). E Sankey diagram illustrating the composition of PHASTER prophage predictions from the 40 E. aphidicola genomes.

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