Table 2 SNPs that became significant in the joint analysis using the merged Norwegian and German cohorts as LD reference

From: Analysis of the joint effect of SNPs to identify independent loci and allelic heterogeneity in schizophrenia GWAS data

SNPa

Positionb

p value PGC discoveryc

pJ after CRd

PGC p value discovery + replicatione

rs1509378

2: 22,754,466

8.37 × 10−8

4.23 × 10−8

Not reported

rs12474906

2: 28,033,538

1.01 × 10−7

4.99 × 10−8

1.36 × 10−7

rs12148337

15: 70,589,272

5.33 × 10−8

6.51 × 10−9

1.78 × 10−8

rs2398180

15: 96,863,169

0.002

6.37 × 10−9

Not reported

  1. adbSNP reference ID for the SNP
  2. bGenomic position (chromosome:base pair) of the marker based on UCSC hg19/NCBI build 37
  3. c p values in the PGC-SCZ discovery sample
  4. d p values in the joint effect model with merged Norwegian and German LD reference samples
  5. eInformation from the PGC for replication testing of each marker
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