Table 2 Enrichment for dysregulated expression of putative psychiatric illness risk gene orthologues in Der1 cortex and hippocampus.
Study | Loci | Genes | Dysregulated in cortex | Hypergeometric p value for enrichment in the cortex | Dysregulated in hippocampus | Hypergeometric p value for enrichment in the hippocampus |
---|---|---|---|---|---|---|
GWAS, schizophrenia1 | 108 | 348 | 121 genes at 61 loci | p = 1e−13 (p = 8e−19) | 6 genes at 6 loci | p = 0.04 (p = 2e−4) |
GWAS, schizophrenia2 | 143 | 481 | 127 genes at 73 loci | p = 3e−6 (p = 8e−19) | 6 genes at 6 loci | p = 0.09 (p = 8e−4) |
MAGMA, schizophrenia2 | 535 | 210 | p = 3e−30 | 15 | p = 2e−5 | |
CNV (synapse genes), schizophrenia3 | 52 | 25 | p = 8e−7 | 4 | p = 7e−4 | |
GWAS, depression4 | 44 | 70 | 19 at 19 loci | p = 0.02 (p = 9e−5) | 1 | ns |
MAGMA, depression4 | 153 | 33 | p = 0.047 | 1 | ns | |
MAGMA meta-analysis, depression6 | 269 | 94 | p = 4e−11 | 6 | p = 0.01 | |
GWAS, bipolar disorder5 | 30 | 218 | 73 at 21 loci | p = 4e−8 (p = 8e−10) | 3 genes at 3 loci | ns (p = 2e−3) |
MAGMA, bipolar disorder5 | 152 | 49 | p = 2e−5 | 3 | p = 0.09 | |
GWAS, Alzheimer’s Disease55 | 21 | 102 | 9 at 9 loci | p = 3e−3 (p = 6e−3) | 1 | ns |
GWAS cerebral cortex architecture65 | 193 | 57 | p = 5e−5 | 1 | ns |