Table 2 Enrichment for dysregulated expression of putative psychiatric illness risk gene orthologues in Der1 cortex and hippocampus.

From: Functional brain defects in a mouse model of a chromosomal t(1;11) translocation that disrupts DISC1 and confers increased risk of psychiatric illness

Study

Loci

Genes

Dysregulated in cortex

Hypergeometric p value for enrichment in the cortex

Dysregulated in hippocampus

Hypergeometric p value for enrichment in the hippocampus

GWAS, schizophrenia1

108

348

121 genes at 61 loci

p = 1e−13 (p = 8e−19)

6 genes at 6 loci

p = 0.04 (p = 2e−4)

GWAS, schizophrenia2

143

481

127 genes at 73 loci

p = 3e−6 (p = 8e−19)

6 genes at 6 loci

p = 0.09 (p = 8e−4)

MAGMA, schizophrenia2

 

535

210

p = 3e−30

15

p = 2e−5

CNV (synapse genes), schizophrenia3

 

52

25

p = 8e−7

4

p = 7e−4

GWAS, depression4

44

70

19 at 19 loci

p = 0.02 (p = 9e−5)

1

ns

MAGMA, depression4

 

153

33

p = 0.047

1

ns

MAGMA meta-analysis, depression6

 

269

94

p = 4e−11

6

p = 0.01

GWAS, bipolar disorder5

30

218

73 at 21 loci

p = 4e−8 (p = 8e−10)

3 genes at 3 loci

ns (p = 2e−3)

MAGMA, bipolar disorder5

 

152

49

p = 2e−5

3

p = 0.09

GWAS, Alzheimer’s Disease55

21

102

9 at 9 loci

p = 3e−3 (p = 6e−3)

1

ns

GWAS cerebral cortex architecture65

 

193

57

p = 5e−5

1

ns

  1. Loci indicate the number of associated genomic loci identified by GWAS. Genes indicate the total number of genes at the associated loci or the total number identified by MAGMA. Bracketed p values indicate enrichment for loci containing at least one dysregulated gene orthologue. italics, trend; ns not significant.
  2. p values that are statistically significant are shown in bold.