Table 2 Studies examining alterations in the expression levels of neuroplasticity-related genes.

From: Gene expression studies in Depression development and treatment: an overview of the underlying molecular mechanisms and biological processes to identify biomarkers

Citation

Sample

Methods

Gene

Main findings

Tissue

Fuchsova et al. 201561

25 MDD suicide, 25 healthy control

RT-qPCR Western blot

GPM6A, GPM6B, CORO1A, GIT1, CAMK2A, PLP1

Significant correlations among the expression levels of GPM6A, GPM6B, CORO1A, GIT1 and CAMK2A, but not PLP1 in the hippocampus of control subjects. Decreased GPM6A mRNA levels in the hippocampus of the depressed group as compared with controls. No significant differences were observed between the control and depressed groups for any of the members in the PFC. Decreased BDNF mRNA levels in the depressed subjects compared with controls in both the PCF and the hippocampus. Lower mRNA levels of CORO1A, GIT1 and CAMK2A in the hippocampus of suicides compared with controls.

Postmortem brain tissues

Mossakowska-Wójcik et al. 201765

170 MDD patients 90 healthy controls

RT-qPCR

TCF4

Decreased TCF4 expression at the mRNA and protein levels in patients versus healthy individuals.

Peripheral blood

Iacob et al. 201369

23 females with medication refractory DD: 13 with MDD, 10 with BPD. 19 healthy controls

RT-qPCR

APP, NR3G1

Only BPD patients showed increased APP and NR3G1 expression.

Peripheral blood leukocytes

Bobińska et al. 201767

186 MRD patients 105 healthy controls

RT-qPCR

Neuropsin (NP)

Higher Human NP mRNA level in patients with depression than in the control group.

Peripheral blood

Berent et al. 201470

38 MDD patients 38 healthy controls

RT-qPCR ELISA

VEGFA

Higher VEGFA mRNA and protein expression levels in MDD patients than in controls.

Peripheral blood

Cattaneo et al. 201325

811 MDD patients: 296 men and 514 women 34 healthy controls: 19 males and 15 females

RT-qPCR

BDNF, p11, VGF

Lower mRNA levels of BDNF, p11 and VGF in MDD patients compared with controls.

Peripheral blood

Bhandage et al. 201771

16 men 19 non-pregnant women 40 pregnant women: 25 healthy and 15 depressed

RT-qPCR

GluA1, GluA3, GluA4, GluK2, GluK4, GluK5, GluN2D, GluN1, GluN2C, GluD1, GluD2, GluN3A

Higher expression levels of GluA3 in men compared with pregnant women and in non-pregnant women compared with depressed pregnant women. Higher GluK4 expression levels in men and non-pregnant women than in pregnant women. High expression level of GluN2D in the PBMCs from the healthy pregnant women that were not observed either in depressed pregnant women, in non-pregnant women or men. The GluD1 expression level was higher in non-pregnant women as compared to men whereas the expression was more similar in men and pregnant women.

PBMC

Bobińska et al. 201672

139 MDD patients 95 healthy controls

RT-qPCR

MMP-2, MMP-9, TIMP-2

Decreased expression of MMP-2, MMP-9 and TIMP-2 genes on both mRNA and protein levels in depression when compared with.

Peripheral blood

Guo et al. 201573

50 first episode SSD 20 MDD patients 50 healthy controls

RT-qPCR

PRCKB1

PRCKB1 gene expression was downregulated in SSD patients, and a more dramatic downregulation in MDD patients than control.

PBMC

Hong et al. 201549

50 MDD patients: 26 with treatment-resistant depression 24 with treatment-responsive depression 48 healthy controls

RT-qPCR

BDNF, MEK1

BDNF and MEK1 mRNA levels were significantly reduced in patients with MDD when compared with healthy controls, as well as among treatment-resistant depressive patients as compared with treatment-responsive depressive patients.

Peripheral blood leukocytes

Shibata et al. 201358

44 BDP patients: 32 Remission and 12 Depressed 59 MDD patients:39 Remission and 20 Depressed 28 healthy controls

RT-qPCR

HIF-1, VEGF, GLUT1, PGK1, PFKFB3, LDHA

Increased expression of HIF- 1α and HIF-1β mRNA, VEGF and PFKFB3 in both MDD and BPD patients in a depressive state compared with healthy control subjects. mRNA expression levels of GLUT1, PGK1 and LDHA were increased in MDD patients in a depressive state compared with healthy control subjects. Increased expression of HIF-1α and LDHA mRNA in MDD patients in a remissive state, whereas the mRNA expression levels of other genes in a remissive state were comparable to those in healthy control subjects.

Peripheral blood

  1. MDD major depressive disorder, PCR polymerase chain reaction, DD depressive disorder, BPD bipolar disorder, rDD recurrent major depression, SSD subsyndromal symptomatic depression, RT-qPCR Reverse transcription (RT) quantitative PCR, PTSD post-traumatic stress disorder.