Table 1 Software and tools commonly used in resting-state functional connectome analysis.

DPARSF

http://rfmri.org/DPARSF

Data preprocessing and statistical analysis

DPABI

http://rfmri.org/dpabi

Data preprocessing and statistical analysis

SPM12

http://www.fil.ion.ucl.ac.uk/spm

Data preprocessing and statistical analysis

restplus

http://resting-fmri.sourceforge.net

Data preprocessing and statistical analysis

Group ICA Toolbox

http://icatb.sourceforge.net/groupica.htm

Independent component analysis

GraphVar

http://rfmri.org/GraphVar

Graph theory analysis

GRETNA

https://www.nitrc.org/projects/gretna

Data preprocessing and graph theory analysis

Graph Theory GLM

https://www.nitrc.org/projects/metalab_gtg

Data preprocessing and graph theory analysis

CONN

https://www.nitrc.org/projects/conn

Data preprocessing and statistical analysis

C-PAC

https://fcp-indi.github.io/

Data preprocessing and statistical analysis

CosmoMVPA

http://www.cosmomvpa.org/

Multi-voxel pattern analysis

BrainNetViewer

https://www.nitrc.org/projects/bnv/

Visualization of results

MRIcro

https://www.nitrc.org/projects/mricro/

Visualization of results

MRIcron

https://www.nitrc.org/projects/mricron

Visualization of results

Xjview

https://www.alivelearn.net/xjview/

Visualization of results