Table 1 Rare variants identified in both alleles of either RELN or VLDLR genes and in one allele of genes for Ca2+ channels in individuals with ASD.

From: Rare CACNA1H and RELN variants interact through mTORC1 pathway in oligogenic autism spectrum disorder

Patient ID

Gene

Region

Variant description

Relation

Inheritance

Brazilian cohort

F2688-1

RELN

Exonic

RELN:NM_005045:exon48:c.C7538G:p.S2513C

Proband

Father

RELN

Exonic

RELN:NM_005045:exon48:c.C7634T:p.A2545V

Mother

CACNA1H

Splicing

CACNA1H:NM_021098:exon13:c.2907 + 1G>A

De novo

F10832-1

VLDLR

Exonic

VLDLR:NM_003383:exon8:c.T1132C:p.Y378H

Proband

Father

VLDLR

Exonic

VLDLR:NM_003383:exon13:c.G1901A:p.R634H

Mother

CACNA2D4

Exonic

CACNA2D4:NM_172364:exon22:c.C2095T:p.L699F

Father

F11463-1

RELN

Exonic; Splicing

RELN:NM_005045:exon38:c.C5618T:p.T1873I

Proband

Father

RELN

Exonic

RELN:NM_005045:exon42:c.G6343A:p.G2115S

Mother

RYR3

Exonic

RYR3:NM_001036:exon20:c.G2486A:p.R829H

Mother

MSSNG cohort

1-1098-003

RELN

Exonic

RELN:NM_005045:exon39:c.G5961T:p.K1987N

Proband

Father/de novo

RELN

Exonic

RELN:NM_005045:exon34:c.C5108G:p.P1703R

Mother

RYR2

Exonic

RYR2:NM_001035:exon67:c.G9569A:p.R3190Q

Mother

2-1259-004

RELN

Exonic

RELN:NM_005045:exon54:c.C8795A:p.S2932Y

Affected sibling

NA

RELN

Exonic

RELN:NM_005045:exon25:c.C3477A:p.N1159K

NA

RYR1

Exonic

RYR1:NM_000540:exon29:c.C4213A:p.P1405T

NA

5-5057-003

RELN

Exonic

RELN:NM_005045:exon20:c.G2689A:p.D897N

Proband

Father

RELN

Exonic

RELN:NM_005045:exon34:c.C5108G:p.P1703R

Mother

ORAI1

Exonic

ORAI1:NM_032790:exon2:c.126_127insA:p.A42fs

Mother

7-0276-003

VLDLR

Exonic

VLDLR:NM_003383:exon14:c.G1967A:p.R656H

Proband

Father/de novo

VLDLR

Exonic

VLDLR:NM_003383:exon10:c.G1313A:p.G438D

Father/de novo

VLDLR

Exonic

VLDLR:NM_003383:exon3:c.A242G:p.N81S

Mother

CACNA1B

Exonic

CACNA1B:NM_000718:exon21:c.A3370G:p.I1124V

Mother

AU2168301

RELN

Exonic

RELN:NM_005045:exon2:c.T334C:p.F112L

Proband

Father

RELN

Exonic

RELN:NM_005045:exon34:c.C5108G:p.P1703R

Mother

GRIN2C

Exonic

GRIN2C:NM_000835:exon2:c.C193T:p.L65F

Mother

AU3756301

RELN

Exonic

RELN:NM_005045:exon39:c.G5923A:p.G1975S

Proband

Father/de novo

RELN

Exonic

RELN:NM_005045:exon48:c.C7580A:p.S2527Y

Mother

CACNA2D4

Exonic

CACNA2D4:NM_172364:exon37:c.G3245A:p.C1082Y

Father/de novo

CACNA1H

Exonic

CACNA1H:NM_021098:exon9:c.G1508A:p.R503H

Mother

AU4027306

RELN

Exonic

RELN:NM_005045:exon1:c.C59T:p.T20M

Affected sibling

Father

RELN

Exonic

RELN:NM_005045:exon42:c.G6458A:p.G2153D

Mother

CACNA1A

Exonic

CACNA1A:NM_001127222:exon46:c.C6772A:p.H2258N

De novo

CACNB2

Exonic

CACNB2:NM_201571:exon14:c.C1891T:p.R631C

Father