Table 2 Functional analysis of significant protein modules.

From: Network analysis of plasma proteomes in affective disorders

 

Brown module

Turquoise module

Function

Number of proteins

P value

Q value

Function

Number of proteins

P value

Q value

BP

Proteolysis

32

5.69E−15

1.31E−11

Plasma lipoprotein particle remodeling

8

1.14E−10

1.82E−07

 

Protein activation cascade

14

2.47E−14

2.84E−11

Protein–lipid complex remodeling

8

1.14E−10

1.82E−07

 

Complement activation

13

1.63E−13

1.25E−10

Macromolecular complex remodeling

8

1.86E−10

1.99E−07

 

Humoral immune response

15

3.51E−11

2.01E−08

Plasma lipoprotein particle organization

8

2.80E−09

2.25E−06

 

Response to external stimulus

32

2.72E−10

1.23E−07

Lipid transport

16

3.94E−09

2.36E−06

CC

Extracellular space

54

4.35E−37

1.30E−34

Extracellular region part

68

6.18E−22

2.42E−19

 

Extracellular region part

58

1.37E−27

2.03E−25

High-density lipoprotein particle

13

3.87E−20

7.58E-18

 

Blood microparticle

20

1.82E−24

1.81E−22

Extracellular space

49

1.18E−19

1.54E−17

 

Extracellular region

58

4.06E−23

3.02E−21

Plasma lipoprotein particle

13

1.67E−18

1.31E−16

 

Extracellular vesicle

40

3.72E−18

1.90E−16

Lipoprotein particle

13

1.67E−18

1.31E−16

MF

Serine-type endopeptidase inhibitor activity

10

2.25E−10

6.69E−08

Cell adhesion molecule binding

15

1.14E−06

4.73E−04

 

Endopeptidase inhibitor activity

11

2.80E−09

3.78E−07

Receptor binding

26

5.02E−06

1.04E−03

 

Peptidase inhibitor activity

11

3.99E−09

3.78E−07

Lipid binding

17

1.06E−05

1.46E−03

 

Endopeptidase regulator activity

11

5.09E−09

3.78E−07

Enzyme inhibitor activity

12

1.54E−05

1.60E−03

 

Peptidase regulator activity

11

3.02E−08

1.62E−06

Serine-type endopeptidase inhibitor activity

7

2.06E−05

1.71E−03

KEGG

Complement and coagulation cascades

20

1.61E−26

2.18E−24

Cholesterol metabolism

9

7.00E−09

1.16E−06

  1. BP biological process, CC cellular component, MF molecular function, KEGG Kyoto Encyclopedia of Genes and Genomes.
  2. The top five terms of DAVID functional annotation of BP, CC, MF, and the top KEGG pathway are presented.
  3. Q value based on the Benjamini FDR correction.