Table 3 CpGs associated with child attention problems (FDR < 5%) are linked to genes, exposures, and outcomes in the GWAS and EWAS Catalog.
CpG | Location | Gene annotation | GWAS Catalog Hits | GWAS Catalog Entries | EWAS Catalog Hits | EWAS Catalog Entries |
---|---|---|---|---|---|---|
cg06913365 | chr1: 13825255 | LRRC38 | 6 | Blood pressure | 1 | Incident Type 2 Diabetes |
cg08220278 | chr1: 180137345 | QSOX1 | 15 | Blood pressure, anorexia nervosa | — | |
cg22727761 | chr1: 24286270 | PNRC2 | — | 1 | HIV infection | |
cg19418235 | chr1: 3614558 | TP73 | 11 | Leukemia, visceral adipose tissue measurement, waist-hip ratio, lung carcinoma | — | |
cg09062708 | chr1: 61649907 | NFIA | 274 | Bipolar disorder, risk-taking behavior, educational attainment, brain measurement, mathematical ability, ADHD, substance abuse, antisocial behavior, autism spectrum disorder, anxiety, preterm birth | 9 | Tissue, GA, Age, Rheumatoid arthritis, Alzheimer’s disease break stage |
cg03355952 | chr2: 179316072 | PRKRA | 6 | High density lipoprotein cholesterol measurement, atopic eczema, psoriasis | — | |
DFNB59 | — | |||||
MIR548N | — | |||||
cg09560533 | chr2: 241776193 | — | — | 1 | Tissue | |
cg02843332 | chr2: 3283237 | TSSC1 | — | — | ||
cg08976687 | chr2: 85515537 | TCF7L1 | 51 | Blood pressure, cervical carcinoma | 4 | Tissue, age |
cg01807408 | chr3: 87137933 | — | 3 | Tissue, age, sex | ||
cg21415305 | chr3: 9851855 | TTLL3 | 3 | Educational attainment | 3 | Schizophrenia, Progressive supranuclear palsy |
cg01132150 | chr5: 131782489 | C5orf56 | — | 7 | Tissue, GA, Age | |
cg01277890 | chr5: 138731822 | LOC389333 | — | 4 | Tissue, age, incident COPD, lung cancer | |
cg25109393 | chr5: 73936428 | ENC1 | 4 | Aging, cognition | 2 | Tissue, HIV infection |
cg05182265 | chr7: 156933206 | UBE3C | 35 | Type 2 diabetes mellitus, whole brain volume, response to antidepressant, body mass index, systolic blood pressure | 6 | Tissue, age, GA, maternal smoking in pregnancy |
cg18773807 | chr7: 75543705 | POR | 54 | Body height, mathematical ability, non-high-density lipoprotein cholesterol measurement | 1 | Protein levels |
MIR4651 | — | |||||
cg10020385 | chr8: 145159706 | MAF1 | 2 | Mean corpuscular hemoglobin concentration | 1 | Atopy |
SHARPIN | 12 | Asthma, hippocampal volume, cortical thickness, Alzheimer’s disease | ||||
cg26385256 | chr8: 38326334 | FGFR1 | 66 | Body mass index, schizophrenia, cortical thickness, autism spectrum disorder, bipolar disorder, ADHD, response to cognitive behavioral therapy, type 2 diabetes mellitus, birth weight, brain measurement, antisocial behavior, substance abuse | 5 | Age, pancreatic ductal adenocarcinoma, rheumatoid arthritis |
cg09297702 | chr11: 128784689 | KCNJ5 | 37 | Blood pressure, resting heart rate | — | |
cg13717333 | chr12: 122459966 | BCL7A | 37 | Body mass index, body weight, educational attainment | 2 | Age, Tissue |
cg26076948 | chr12: 132892417 | GALNT9 | 24 | Body mass index, antisaccade response, cardiovascular disease, alcohol consumption | 2 | Age |
cg02134355 | chr12: 53675972 | ESPL1 | 7 | Body mass index | — | |
cg10457436 | chr12: 6745871 | LPAR5 | 17 | High density lipoprotein cholesterol measurement | 5 | Tissue, age, GA, birthweight |
cg11932091 | chr12: 8717391 | — | — | 4 | Age, tissue, GA | |
cg12228863 | chr13: 95069222 | — | — | — | ||
cg04999580 | chr16: 3551846 | CLUAP1 | 20 | Body mass index, educational attainment, type 2 diabetes mellitus, cardiovascular disease | — | |
cg04468927 | chr16: 70514664 | COG4 | 6 | Body mass index, body weight | 2 | Tissue, GA |
cg20139664 | chr17: 36628961 | ARHGAP23 | 16 | Reaction time, brain measurement | — | |
cg11237284 | chr17: 6458238 | PITPNM3 | 17 | Blood pressure, educational attainment, reaction time, ADHD, substance abuse, antisocial behavior | 1 | Protein levels |
cg22514284 | chr17: 72754345 | SLC9A3R1 | 25 | White blood cell count | — | |
cg27648858 | chr19: 18266834 | PIK3R2 | 12 | Intelligence, ADHD, autism spectrum disorder | 7 | Tissue, clear cell renal carcinoma, GA, age, hypertensive disorders of pregnancy |
cg14798653 | chr19: 6475497 | DENND1C | 3 | Brain measurement | 5 | Tissue, clear cell carcinoma, age, Alzheimer’s disease braak stage, Braak stage |
cg05076365 | chr21: 17011727 | — | — | 1 | Incident liver cirrhosis |